Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.

A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata

A simple and performant native R reader & writer for Zarr Arrays

Pure python/C++ micro-manager ecosystem

ngio is a Python library to streamline OME-Zarr image analysis workflows.

A minimal Python package for reading, writing and validating OME-Zarr (meta)data

Various tools for creating and manipulating Zarr V3 data with the zarrs Rust crate

A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.

A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.

Browse, share, and publish OME-Zarr data

An introduction to OME-Zarr for big bioimaging data

Main tasks for the Fractal analytics platform

Create web-based OME-Zarr galleries

A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-Zarr tools.

GIve easy, high-level access to ome-zarr fileset

A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)

Unified API for streaming camera frames to either OME-TIFF or OME-Zarr format

Web page for validating OME-NGFF files