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FAIM

Facility for Advanced Imaging and Microscopy at FMI Basel

16 followers
Switzerland

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fmi-ij2-plugins fmi-ij2-plugins Public

A collection of ImageJ2 plugins for use with KNIME

Java 8 3
visiview-scripts visiview-scripts Public

A collection of macros for the VisiView acquisition software

Python 1 1
imagej-scripts imagej-scripts Public

Python 1

Repositories

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All Batchfile Bikeshed HTML Java Jinja Jupyter Notebook Python Rust Shell

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Showing 10 of 73 repositories

napari-save-transformed Public
Save image layers with their transformation applied

fmi-faim/napari-save-transformed's past year of commit activity

Python 3 BSD-3-Clause 0 1 1 Updated Aug 3, 2026
ipa-project-template Public
Copier template for image processing & analysis projects.

fmi-faim/ipa-project-template's past year of commit activity

Jinja 7 MIT 3 6 (1 issue needs help) 1 Updated Aug 3, 2026
example-project Public

fmi-faim/example-project's past year of commit activity

Jupyter Notebook 2 BSD-3-Clause 0 0 1 Updated Aug 3, 2026
faim-ipa Public
A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)

fmi-faim/faim-ipa's past year of commit activity

Python 20 BSD-3-Clause 9 20 7 Updated Aug 3, 2026
faim-wako-searchfirst Public
Python scripts for the SearchFirst option in Wako Software Suite

fmi-faim/faim-wako-searchfirst's past year of commit activity

Python 2 MIT 1 9 4 Updated Aug 3, 2026
cellvoyager-types Public
Pydantic models for CellVoyager CV7000/CV8000 metadata

fmi-faim/cellvoyager-types's past year of commit activity

Python 1 BSD-3-Clause 2 1 1 Updated Aug 3, 2026
metamorph-mda-parser Public
Light-weight parsing of Metamorph/VisiView Multi Dimensional Acquisition .nd files.

fmi-faim/metamorph-mda-parser's past year of commit activity

Python 0 BSD-3-Clause 0 3 0 Updated Aug 3, 2026
faim-fractal-converters Public

fmi-faim/faim-fractal-converters's past year of commit activity

Python 0 0 5 0 Updated Jul 28, 2026
ngio-points-table Public
Prototype for a PointsTable implementation to serialize points data into OME-Zarr datasets

fmi-faim/ngio-points-table's past year of commit activity

Python 0 0 0 0 Updated Jul 25, 2026
napari-ome-zarr-navigator Public Forked from fractal-napari-plugins-collection/napari-ome-zarr-navigator

fmi-faim/napari-ome-zarr-navigator's past year of commit activity

Python 0 BSD-3-Clause 3 0 0 Updated Jul 24, 2026

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