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humann3

Here are 4 public repositories matching this topic...

LessUp / micos-2024

End-to-end Metagenomic Intelligence and Comprehensive Omics Suite (Mammoth Cup 2024 Entry) | 端到端宏基因组综合分析平台（猛犸杯2024参赛项目）

python docker workflow bioinformatics genomics computational-biology metagenomics wdl data-analysis microbiome qiime2 kraken2 humann3 metagenomics-pipeline nextgen-sequencing nextflow-alternative

Updated Jun 1, 2026
R

PopovIILab / BatShotMetaFlow

🦇🧫📊Study on bat gut shotgun metagenomics

phylogenetics beta-diversity microbial-communities blast spades differential-abundance-analyses fastq-files refseq alpha-diversity prokka quast kraken2 abricate lab-journal maaslin2 shotgun-metagenomics fastani humann3 virsorter2

Updated May 21, 2026
Jupyter Notebook

Gabriele-Conti / FUNCMAP

A downstream companion for MetaPhlAn (nf-core/taxprofiler), enabling HUMAnN functional and RGI/CARD AMR profiling from shotgun metagenomes.

rgi nf-core antimicrobial-resistance functional-profiling shotgun-metagenomics humann3 metaphlan4 taxprofiler

Updated May 29, 2026
Nextflow

kavyamguru / MSc_Dissertation_Kvass

Integrated 16S + shotgun metagenomics workflow for kvass fermentation (QIIME2, MetaPhlAn4, Kraken2, HUMAnN3, DRAM2) with reproducible outputs.

Updated Feb 28, 2026
Shell

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