AcinetoScope: A species-specific computational pipeline for rapid, comprehensive Acinetobacter baumannii outbreak investigation and resistance gene tracking
Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies
Toxinotype assignment of Clostridium perfringens via ABRicate
Plasmidome analysis to track the transfer route of AMR genes in bacteria
🦇🧫📊Study on bat gut shotgun metagenomics
Python-based genomic pipeline for carbapenemase gene detection and prevalence analysis from ABRicate outputs of clinical Klebsiella pneumoniae isolates.
This script is used to convert the output of ABRICATE tabulated output into a matrix samples with the genes as columns and the presence/absence of the gene as the values.
AI-assisted pipeline for mining candidate Staphylococcus invasome and virulence-associated genes from assembled genome FASTA files.
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