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fix: update vep wrappers to 8.0.0 to make env installable #402

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johanneskoester merged 2 commits into from
Nov 13, 2025
Merged

fix: update vep wrappers to 8.0.0 to make env installable #402

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3118010
fix: update vep wrappers to 8.0.0 to make env installable
famosab Nov 12, 2025
9193c2c
fix: use correct version
famosab Nov 13, 2025
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4 changes: 2 additions & 2 deletions workflow/rules/annotation.smk
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Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ rule annotate_candidate_variants:
group:
"candidate-annotation"
wrapper:
"v7.6.0/bio/vep/annotate"
"v8.8.0/bio/vep/annotate"
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rule annotate_variants:
Expand Down Expand Up @@ -49,7 +49,7 @@ rule annotate_variants:
group:
"annotation"
wrapper:
"v7.6.0/bio/vep/annotate"
"v8.8.0/bio/vep/annotate"


# TODO What about multiple ID Fields?
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4 changes: 2 additions & 2 deletions workflow/rules/ref.smk
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Original file line number Diff line number Diff line change
Expand Up @@ -134,7 +134,7 @@ rule get_vep_cache:
"logs/vep/cache.log",
cache: "omit-software"
wrapper:
"v7.6.0/bio/vep/cache"
"v8.0.0/bio/vep/cache"


rule get_vep_plugins:
Expand All @@ -145,7 +145,7 @@ rule get_vep_plugins:
log:
"logs/vep/plugins.log",
wrapper:
"v7.7.0/bio/vep/plugins"
"v8.8.0/bio/vep/plugins"


rule get_pangenome:
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