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feature query: output full SFS

enhancementNew feature or requestNew feature or request

Status: Open.

#59 In cademirch/clam;

· andrewparkermorgan opened on Jun 19, 2026

Question: Unexpectedly high π values (~10× higher than typical bird species)

Status: Open.

#58 In cademirch/clam;

· elizakirsch0 opened on Apr 29, 2026

feature request: genome-wide statistics

Status: Open.

#56 In cademirch/clam;

· mufernando opened on Apr 2, 2026

clam loci with -p flag causes "index out of bounds" crash when treating each sample as its own population

Status: Open.

#55 In cademirch/clam;

· elizakirsch0 opened on Apr 1, 2026

SFI index?

Status: Open.

#48 In cademirch/clam;

· mufernando opened on Mar 30, 2026

--samples option does not work as dropin replacement for --population-file

Status: Open.

#42 In cademirch/clam;

· percyfal opened on Feb 12, 2026

clam collect followed by clam loci does not take population labels into account

Status: Open.

#41 In cademirch/clam;

· percyfal opened on Feb 12, 2026

clam loci fails on gVCF

Status: Open.

#27 In cademirch/clam;

· bernard-kim opened on Dec 22, 2025

Output sum/mean of coverages of samples

Status: Open.

#25 In cademirch/clam;

· percyfal opened on Nov 25, 2025