Related to #41; I think this is true for both clam loci and clam stat. The samples option does not seem to take populations into account. Also, when generating a callable.zarr with a sample-to-population file, downstream regrouping of samples via --samples/--population-file may fail since if the population definitions differ from the number of columns in callable.zarr:
The application panicked (crashed).
Message: ndarray: index out of bounds
Location: /home/peru/.cargo/registry/src/index.crates.io-1949cf8c6b5b557f/ndarray-0.16.1/src/arraytraits.rs:36
If a callable.zarr already defines populations that are immutable, then it would suffice with a boolean flag to turn on population-specific statistics or not.
Related to #41; I think this is true for both
clam lociandclam stat. The samples option does not seem to take populations into account. Also, when generating acallable.zarrwith a sample-to-population file, downstream regrouping of samples via--samples/--population-filemay fail since if the population definitions differ from the number of columns incallable.zarr:If a
callable.zarralready defines populations that are immutable, then it would suffice with a boolean flag to turn on population-specific statistics or not.