[docs repo] fix can't edit a file, delete a file

Makefile

@@ -1,186 +1,6 @@
 .PHONY: clean dev all check checkstatic unittests jslatest testdata locales
 
-POFILES=locale/fr/LC_MESSAGES/loris.po \
-	locale/ja/LC_MESSAGES/loris.po \
-	locale/hi/LC_MESSAGES/loris.po \
-	locale/es/LC_MESSAGES/loris.po \
-	locale/en/LC_MESSAGES/loris.po \
-	locale/zh/LC_MESSAGES/loris.po \
-	modules/biobank/locale/fr/LC_MESSAGES/biobank.po \
-	modules/media/locale/fr/LC_MESSAGES/media.po \
-	modules/media/locale/ja/LC_MESSAGES/media.po \
-	modules/media/locale/hi/LC_MESSAGES/media.po \
-	modules/media/locale/es/LC_MESSAGES/media.po \
-	modules/datadict/locale/fr/LC_MESSAGES/datadict.po \
-	modules/datadict/locale/ja/LC_MESSAGES/datadict.po \
-	modules/datadict/locale/hi/LC_MESSAGES/datadict.po \
-	modules/mri_violations/locale/fr/LC_MESSAGES/mri_violations.po \
-	modules/mri_violations/locale/ja/LC_MESSAGES/mri_violations.po \
-	modules/mri_violations/locale/hi/LC_MESSAGES/mri_violations.po \
-	modules/mri_violations/locale/es/LC_MESSAGES/mri_violations.po \
-	modules/statistics/locale/fr/LC_MESSAGES/statistics.po \
-	modules/statistics/locale/ja/LC_MESSAGES/statistics.po \
-	modules/server_processes_manager/locale/ja/LC_MESSAGES/server_processes_manager.po \
-	modules/server_processes_manager/locale/hi/LC_MESSAGES/server_processes_manager.po \
-	modules/module_manager/locale/fr/LC_MESSAGES/module_manager.po \
-	modules/module_manager/locale/ja/LC_MESSAGES/module_manager.po \
-	modules/module_manager/locale/hi/LC_MESSAGES/module_manager.po \
-	modules/configuration/locale/ja/LC_MESSAGES/configuration.po \
-	modules/oidc/locale/ja/LC_MESSAGES/oidc.po \
-	modules/instrument_list/locale/fr/LC_MESSAGES/instrument_list.po \
-	modules/instrument_list/locale/ja/LC_MESSAGES/instrument_list.po \
-	modules/instrument_list/locale/es/LC_MESSAGES/instrument_list.po \
-	modules/my_preferences/locale/fr/LC_MESSAGES/my_preferences.po \
-	modules/my_preferences/locale/ja/LC_MESSAGES/my_preferences.po \
-	modules/my_preferences/locale/hi/LC_MESSAGES/my_preferences.po \
-	modules/dicom_archive/locale/fr/LC_MESSAGES/dicom_archive.po \
-	modules/dicom_archive/locale/ja/LC_MESSAGES/dicom_archive.po \
-	modules/dicom_archive/locale/hi/LC_MESSAGES/dicom_archive.po \
-	modules/new_profile/locale/fr/LC_MESSAGES/new_profile.po \
-	modules/new_profile/locale/ja/LC_MESSAGES/new_profile.po \
-	modules/new_profile/locale/hi/LC_MESSAGES/new_profile.po \
-	modules/new_profile/locale/es/LC_MESSAGES/new_profile.po \
-	modules/dqt/locale/ja/LC_MESSAGES/dqt.po \
-	modules/bvl_feedback/locale/fr/LC_MESSAGES/bvl_feedback.po \
-	modules/bvl_feedback/locale/ja/LC_MESSAGES/bvl_feedback.po \
-	modules/genomic_browser/locale/fr/LC_MESSAGES/genomic_browser.po \
-	modules/genomic_browser/locale/ja/LC_MESSAGES/genomic_browser.po \
-	modules/instruments/locale/fr/LC_MESSAGES/instruments.po \
-	modules/instruments/locale/ja/LC_MESSAGES/instruments.po \
-	modules/instruments/locale/es/LC_MESSAGES/instruments.po \
-	modules/dictionary/locale/fr/LC_MESSAGES/dictionary.po \
-	modules/dictionary/locale/ja/LC_MESSAGES/dictionary.po \
-	modules/dictionary/locale/hi/LC_MESSAGES/dictionary.po \
-	modules/instrument_manager/locale/ja/LC_MESSAGES/instrument_manager.po \
-	modules/candidate_profile/locale/fr/LC_MESSAGES/candidate_profile.po \
-	modules/candidate_profile/locale/ja/LC_MESSAGES/candidate_profile.po \
-	modules/behavioural_qc/locale/fr/LC_MESSAGES/behavioural_qc.po \
-	modules/behavioural_qc/locale/ja/LC_MESSAGES/behavioural_qc.po \
-	modules/behavioural_qc/locale/hi/LC_MESSAGES/behavioural_qc.po \
-	modules/user_accounts/locale/fr/LC_MESSAGES/user_accounts.po \
-	modules/user_accounts/locale/ja/LC_MESSAGES/user_accounts.po \
-	modules/user_accounts/locale/hi/LC_MESSAGES/user_accounts.po \
-	modules/schedule_module/locale/fr/LC_MESSAGES/schedule_module.po \
-	modules/schedule_module/locale/ja/LC_MESSAGES/schedule_module.po \
-	modules/schedule_module/locale/hi/LC_MESSAGES/schedule_module.po \
-	modules/imaging_uploader/locale/fr/LC_MESSAGES/imaging_uploader.po \
-	modules/imaging_uploader/locale/ja/LC_MESSAGES/imaging_uploader.po \
-	modules/imaging_uploader/locale/hi/LC_MESSAGES/imaging_uploader.po \
-	modules/next_stage/locale/fr/LC_MESSAGES/next_stage.po \
-	modules/next_stage/locale/ja/LC_MESSAGES/next_stage.po \
-	modules/next_stage/locale/es/LC_MESSAGES/next_stage.po \
-	modules/examiner/locale/fr/LC_MESSAGES/examiner.po \
-	modules/examiner/locale/ja/LC_MESSAGES/examiner.po \
-	modules/examiner/locale/hi/LC_MESSAGES/examiner.po \
-	modules/login/locale/fr/LC_MESSAGES/login.po \
-	modules/login/locale/ja/LC_MESSAGES/login.po \
-	modules/instrument_builder/locale/fr/LC_MESSAGES/instrument_builder.po \
-	modules/instrument_builder/locale/ja/LC_MESSAGES/instrument_builder.po \
-	modules/instrument_builder/locale/hi/LC_MESSAGES/instrument_builder.po \
-	modules/document_repository/locale/fr/LC_MESSAGES/document_repository.po \
-	modules/document_repository/locale/ja/LC_MESSAGES/document_repository.po \
-	modules/document_repository/locale/hi/LC_MESSAGES/document_repository.po \
-	modules/conflict_resolver/locale/fr/LC_MESSAGES/conflict_resolver.po \
-	modules/conflict_resolver/locale/ja/LC_MESSAGES/conflict_resolver.po \
-	modules/conflict_resolver/locale/hi/LC_MESSAGES/conflict_resolver.po \
-	modules/candidate_list/locale/fr/LC_MESSAGES/candidate_list.po \
-	modules/candidate_list/locale/ja/LC_MESSAGES/candidate_list.po \
-	modules/candidate_list/locale/hi/LC_MESSAGES/candidate_list.po \
-	modules/create_timepoint/locale/fr/LC_MESSAGES/create_timepoint.po \
-	modules/create_timepoint/locale/ja/LC_MESSAGES/create_timepoint.po \
-	modules/create_timepoint/locale/hi/LC_MESSAGES/create_timepoint.po \
-	modules/create_timepoint/locale/es/LC_MESSAGES/create_timepoint.po \
-	modules/brainbrowser/locale/fr/LC_MESSAGES/brainbrowser.po \
-	modules/brainbrowser/locale/ja/LC_MESSAGES/brainbrowser.po \
-	modules/brainbrowser/locale/hi/LC_MESSAGES/brainbrowser.po \
-	modules/dataquery/locale/fr/LC_MESSAGES/dataquery.po \
-	modules/dataquery/locale/ja/LC_MESSAGES/dataquery.po \
-	modules/dataquery/locale/hi/LC_MESSAGES/dataquery.po \
-	modules/issue_tracker/locale/fr/LC_MESSAGES/issue_tracker.po \
-	modules/issue_tracker/locale/ja/LC_MESSAGES/issue_tracker.po \
-	modules/issue_tracker/locale/hi/LC_MESSAGES/issue_tracker.po \
-	modules/timepoint_list/locale/fr/LC_MESSAGES/timepoint_list.po \
-	modules/timepoint_list/locale/ja/LC_MESSAGES/timepoint_list.po \
-	modules/timepoint_list/locale/es/LC_MESSAGES/timepoint_list.po \
-	modules/data_release/locale/fr/LC_MESSAGES/data_release.po \
-	modules/data_release/locale/ja/LC_MESSAGES/data_release.po \
-	modules/data_release/locale/hi/LC_MESSAGES/data_release.po \
-	modules/electrophysiology_uploader/locale/fr/LC_MESSAGES/electrophysiology_uploader.po \
-	modules/electrophysiology_uploader/locale/ja/LC_MESSAGES/electrophysiology_uploader.po \
-	modules/electrophysiology_uploader/locale/hi/LC_MESSAGES/electrophysiology_uploader.po \
-	modules/acknowledgements/locale/ja/LC_MESSAGES/acknowledgements.po \
-	modules/survey_accounts/locale/hi/LC_MESSAGES/survey_accounts.po \
-	modules/survey_accounts/locale/ja/LC_MESSAGES/survey_accounts.po \
-	modules/battery_manager/locale/fr/LC_MESSAGES/battery_manager.po \
-	modules/battery_manager/locale/ja/LC_MESSAGES/battery_manager.po \
-	modules/battery_manager/locale/hi/LC_MESSAGES/battery_manager.po \
-	modules/imaging_qc/locale/ja/LC_MESSAGES/imaging_qc.po \
-	modules/electrophysiology_browser/locale/fr/LC_MESSAGES/electrophysiology_browser.po \
-	modules/electrophysiology_browser/locale/ja/LC_MESSAGES/electrophysiology_browser.po \
-	modules/api_docs/locale/ja/LC_MESSAGES/api_docs.po \
-	modules/publication/locale/fr/LC_MESSAGES/publication.po \
-	modules/publication/locale/ja/LC_MESSAGES/publication.po \
-	modules/publication/locale/hi/LC_MESSAGES/publication.po \
-	modules/publication/locale/en/LC_MESSAGES/publication.po \
-	modules/dashboard/locale/fr/LC_MESSAGES/dashboard.po \
-	modules/dashboard/locale/ja/LC_MESSAGES/dashboard.po \
-	modules/candidate_parameters/locale/ja/LC_MESSAGES/candidate_parameters.po \
-	modules/candidate_parameters/locale/es/LC_MESSAGES/candidate_parameters.po \
-	modules/imaging_browser/locale/fr/LC_MESSAGES/imaging_browser.po \
-	modules/imaging_browser/locale/ja/LC_MESSAGES/imaging_browser.po \
-	modules/imaging_browser/locale/hi/LC_MESSAGES/imaging_browser.po \
-	modules/help_editor/locale/fr/LC_MESSAGES/help_editor.po \
-	modules/help_editor/locale/ja/LC_MESSAGES/help_editor.po \
-	modules/help_editor/locale/hi/LC_MESSAGES/help_editor.po \
-	modules/acknowledgements/locale/zh/LC_MESSAGES/acknowledgements.po \
-	modules/api_docs/locale/zh/LC_MESSAGES/api_docs.po \
-	modules/battery_manager/locale/zh/LC_MESSAGES/battery_manager.po \
-	modules/behavioural_qc/locale/zh/LC_MESSAGES/behavioural_qc.po \
-	modules/brainbrowser/locale/zh/LC_MESSAGES/brainbrowser.po \
-	modules/bvl_feedback/locale/zh/LC_MESSAGES/bvl_feedback.po \
-	modules/candidate_list/locale/zh/LC_MESSAGES/candidate_list.po \
-	modules/candidate_parameters/locale/zh/LC_MESSAGES/candidate_parameters.po \
-	modules/candidate_profile/locale/zh/LC_MESSAGES/candidate_profile.po \
-	modules/configuration/locale/zh/LC_MESSAGES/configuration.po \
-	modules/conflict_resolver/locale/zh/LC_MESSAGES/conflict_resolver.po \
-	modules/create_timepoint/locale/zh/LC_MESSAGES/create_timepoint.po \
-	modules/dashboard/locale/zh/LC_MESSAGES/dashboard.po \
-	modules/data_release/locale/zh/LC_MESSAGES/data_release.po \
-	modules/datadict/locale/zh/LC_MESSAGES/datadict.po \
-	modules/dataquery/locale/zh/LC_MESSAGES/dataquery.po \
-	modules/dicom_archive/locale/zh/LC_MESSAGES/dicom_archive.po \
-	modules/dictionary/locale/zh/LC_MESSAGES/dictionary.po \
-	modules/document_repository/locale/zh/LC_MESSAGES/document_repository.po \
-	modules/dqt/locale/zh/LC_MESSAGES/dqt.po \
-	modules/electrophysiology_browser/locale/zh/LC_MESSAGES/electrophysiology_browser.po \
-	modules/electrophysiology_uploader/locale/zh/LC_MESSAGES/electrophysiology_uploader.po \
-	modules/examiner/locale/zh/LC_MESSAGES/examiner.po \
-	modules/genomic_browser/locale/zh/LC_MESSAGES/genomic_browser.po \
-	modules/help_editor/locale/zh/LC_MESSAGES/help_editor.po \
-	modules/imaging_browser/locale/zh/LC_MESSAGES/imaging_browser.po \
-	modules/imaging_qc/locale/zh/LC_MESSAGES/imaging_qc.po \
-	modules/imaging_uploader/locale/zh/LC_MESSAGES/imaging_uploader.po \
-	modules/instrument_builder/locale/zh/LC_MESSAGES/instrument_builder.po \
-	modules/instrument_list/locale/zh/LC_MESSAGES/instrument_list.po \
-	modules/instrument_manager/locale/zh/LC_MESSAGES/instrument_manager.po \
-	modules/instruments/locale/zh/LC_MESSAGES/instruments.po \
-	modules/issue_tracker/locale/zh/LC_MESSAGES/issue_tracker.po \
-	modules/login/locale/zh/LC_MESSAGES/login.po \
-	modules/media/locale/zh/LC_MESSAGES/media.po \
-	modules/module_manager/locale/zh/LC_MESSAGES/module_manager.po \
-	modules/mri_violations/locale/zh/LC_MESSAGES/mri_violations.po \
-	modules/my_preferences/locale/zh/LC_MESSAGES/my_preferences.po \
-	modules/new_profile/locale/zh/LC_MESSAGES/new_profile.po \
-	modules/next_stage/locale/zh/LC_MESSAGES/next_stage.po \
-	modules/oidc/locale/zh/LC_MESSAGES/oidc.po \
-	modules/publication/locale/zh/LC_MESSAGES/publication.po \
-	modules/schedule_module/locale/zh/LC_MESSAGES/schedule_module.po \
-	modules/server_processes_manager/locale/zh/LC_MESSAGES/server_processes_manager.po \
-	modules/statistics/locale/zh/LC_MESSAGES/statistics.po \
-	modules/survey_accounts/locale/zh/LC_MESSAGES/survey_accounts.po \
-	modules/timepoint_list/locale/zh/LC_MESSAGES/timepoint_list.po \
-	modules/biobank/locale/zh/LC_MESSAGES/biobank.po \
-	modules/user_accounts/locale/zh/LC_MESSAGES/user_accounts.po
+POFILES=$(wildcard locale/*/LC_MESSAGES/*.po modules/*/locale/*/LC_MESSAGES/*.po project/modules/*/locale/*/LC_MESSAGES/*.po project/locale/*/LC_MESSAGES/*.po)
 
 MOFILES=$(patsubst %.po,%.mo,$(POFILES))
 I18NJSONFILES=$(patsubst %.po,%.json,$(POFILES))

SQL/0000-00-00-schema.sql

@@ -75,6 +75,7 @@ INSERT INTO language (language_code, language_label) VALUES
 
 CREATE TABLE `sex` (
   `Name` varchar(255) NOT NULL,
+  `Colour` varchar(50) NULL,
   PRIMARY KEY `Name` (`Name`)
 ) ENGINE=InnoDB DEFAULT CHARSET=utf8 COMMENT='Stores sex options available for candidates in LORIS';
 
@@ -1090,7 +1091,7 @@ CREATE TABLE `document_repository` (
   `comments` text,
   `multipart` enum('Yes','No') DEFAULT NULL,
   `EARLI` tinyint(1) DEFAULT 0,
-  `hide_video` tinyint(1) DEFAULT 0,
+  `hide_file` tinyint(1) DEFAULT 0,
   `File_category` int(3) unsigned DEFAULT NULL,
   PRIMARY KEY (`record_id`),
   KEY `fk_document_repository_1_idx` (`File_category`),
@@ -1537,6 +1538,35 @@ INSERT INTO StatisticsTabs (ModuleName, SubModuleName, Description, OrderNo) VAL
   ('statistics', 'stats_behavioural', 'Behavioural Statistics', 3),
   ('statistics', 'stats_MRI', 'Imaging Statistics', 4);
 
+
+-- ********************************
+-- statistics
+-- ********************************
+
+
+CREATE TABLE `cached_data_type` (
+    `CachedDataTypeID` INT(10) UNSIGNED NOT NULL AUTO_INCREMENT,
+    `Name` VARCHAR(255) UNIQUE NOT NULL,
+    PRIMARY KEY  (`CachedDataTypeID`)
+) ENGINE=InnoDB DEFAULT CHARSET=utf8;
+
+
+INSERT INTO `cached_data_type` (`Name`) SELECT 'projects_disk_space';
+
+
+CREATE TABLE `cached_data` (
+   `CachedDataID` INT(10) UNSIGNED NOT NULL AUTO_INCREMENT,
+   `CachedDataTypeID` INT(10) UNSIGNED NOT NULL,
+   `Value` TEXT NOT NULL,
+   `LastUpdate` TIMESTAMP NOT NULL
+       DEFAULT CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP,
+   PRIMARY KEY  (`CachedDataID`),
+   CONSTRAINT `FK_cached_data_type` FOREIGN KEY (`CachedDataTypeID`)
+       REFERENCES `cached_data_type` (`CachedDataTypeID`)
+       ON UPDATE CASCADE ON DELETE CASCADE
+) ENGINE=InnoDB DEFAULT CHARSET=utf8;
+
+
 -- ********************************
 -- server_processes tables
 -- ********************************

SQL/9999-99-99-drop_tables.sql

@@ -255,7 +255,12 @@ DROP TABLE IF EXISTS `appointment_type`;
 
 DROP TABLE IF EXISTS `openid_connect_csrf`;
 DROP TABLE IF EXISTS `openid_connect_providers`;
-
+DROP TABLE IF EXISTS `physiological_task_event_history`;
+DROP TABLE IF EXISTS `hed_tag_history`;
+DROP TABLE IF EXISTS `hed_tag_endorsement_history`;
+DROP TABLE IF EXISTS `hed_tag_endorsement`;
+DROP TABLE IF EXISTS `cached_data_type`;
+DROP TABLE IF EXISTS `cached_data`;
 
 DROP TABLE IF EXISTS `candidate_diagnosis_evolution_rel`;
 DROP TABLE IF EXISTS `diagnosis_evolution`;

SQL/New_patches/2025-09-11_add_data_cache_table.sql

@@ -0,0 +1,21 @@
+-- Create cached_data_type table to track different types of cached data
+CREATE TABLE `cached_data_type` (
+    `CachedDataTypeID` INT(10) UNSIGNED NOT NULL AUTO_INCREMENT,
+    `Name` VARCHAR(255) UNIQUE NOT NULL,
+    PRIMARY KEY  (`CachedDataTypeID`)
+) ENGINE=InnoDB DEFAULT CHARSET=utf8;
+
+-- Create cached_data table to track cached data
+CREATE TABLE `cached_data` (
+   `CachedDataID` INT(10) UNSIGNED NOT NULL AUTO_INCREMENT,
+   `CachedDataTypeID` INT(10) UNSIGNED NOT NULL,
+   `Value` TEXT NOT NULL,
+   `LastUpdate` TIMESTAMP NOT NULL
+       DEFAULT CURRENT_TIMESTAMP ON UPDATE CURRENT_TIMESTAMP,
+   PRIMARY KEY  (`CachedDataID`),
+   CONSTRAINT `FK_cached_data_type` FOREIGN KEY (`CachedDataTypeID`)
+       REFERENCES `cached_data_type` (`CachedDataTypeID`)
+       ON UPDATE CASCADE ON DELETE CASCADE
+) ENGINE=InnoDB DEFAULT CHARSET=utf8;
+
+INSERT INTO `cached_data_type` (`Name`) SELECT 'projects_disk_space';

SQL/New_patches/2026-06-15-Add-Sex-Colours.sql

@@ -0,0 +1,20 @@
+ALTER TABLE sex
+ADD COLUMN `Colour` VARCHAR(50) NULL;
+
+SET @sex_row_num := 0;
+
+UPDATE sex s
+JOIN (
+    SELECT Name, (@sex_row_num := @sex_row_num + 1) AS row_num
+    FROM (SELECT Name FROM sex ORDER BY Name LIMIT 6) ordered_names
+) ordered_sex ON ordered_sex.Name = s.Name
+SET s.Colour = CASE ordered_sex.row_num
+    WHEN 1 THEN '#2FA4E7'
+    WHEN 2 THEN '#1C70B6'
+    WHEN 3 THEN '#4AE8C2'
+    WHEN 4 THEN '#7900DB'
+    WHEN 5 THEN '#FF8000'
+    WHEN 6 THEN '#D90074'
+    ELSE s.Colour
+END
+WHERE ordered_sex.row_num <= 6;

SQL/New_patches/2026-07-02-docs-repo-video-to-file.sql

@@ -0,0 +1,2 @@
+ALTER TABLE `document_repository` 
+CHANGE COLUMN `hide_video` `hide_file` tinyint(1) DEFAULT 0;

jsx/Filter.js

@@ -92,14 +92,20 @@ function Filter(props) {
         let element;
         switch (filter.type) {
         case 'text':
-          element = <TextboxElement labelPlacementTop/>;
+          element = (
+            <TextboxElement
+              disabled={filter.disabled}
+              labelPlacementTop
+            />
+          );
           break;
         case 'select':
           element = (
             <SelectElement
               options={filter.options}
               sortByValue={filter.sortByValue}
               autoSelect={false}
+              disabled={filter.disabled}
               labelPlacementTop
             />
           );
@@ -111,13 +117,15 @@ function Filter(props) {
               sortByValue={filter.sortByValue}
               multiple={true}
               emptyOption={false}
+              disabled={filter.disabled}
               labelPlacementTop
             />
           );
           break;
         case 'numeric':
           element = <NumericElement
             options={filter.options}
+            disabled={filter.disabled}
             labelPlacementTop
           />;
           break;
@@ -128,23 +136,48 @@ function Filter(props) {
             step={filter.step}
             minLabel={filter.minLabel}
             maxLabel={filter.maxLabel}
+            disabled={filter.disabled}
             labelPlacementTop
           />;
           break;
         case 'date':
-          element = <DateElement labelPlacementTop />;
+          element = (
+            <DateElement
+              labelPlacementTop
+              disabled={filter.disabled}
+            />
+          );
           break;
         case 'datetime':
-          element = <DateTimePartialElement labelPlacementTop />;
+          element = (
+            <DateTimePartialElement
+              disabled={filter.disabled}
+              labelPlacementTop
+            />
+          );
           break;
         case 'checkbox':
-          element = <CheckboxElement/>;
+          element = (
+            <CheckboxElement
+              disabled={filter.disabled}
+            />
+          );
           break;
         case 'time':
-          element = <TimeElement labelPlacementTop />;
+          element = (
+            <TimeElement
+              disabled={filter.disabled}
+              labelPlacementTop
+            />
+          );
           break;
         default:
-          element = <TextboxElement labelPlacementTop />;
+          element = (
+            <TextboxElement
+              disabled={filter.disabled}
+              labelPlacementTop
+            />
+          );
         }
 
         // The value prop has to default to false if the first two options