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1. protein-classify-and-cluster protein-classify-and-cluster Public

   A Python pipeline for protein structure clustering (PDBs) using all-vs-all TMalign, hierarchical analysis, and secondary structure classification.

   Python 4 1

2. find_interface_hotspot find_interface_hotspot Public

   interface-hotspot finder for RFdiffusion PPI binder design using gemmi + distance-based contact scoring with residue-type weighting and optional exclusions.

   Python 2

3. partial-diffusion-in-batch partial-diffusion-in-batch Public

   Python 2

4. sidechainresidue sidechainresidue Public

   A pymol Plugin to help you identify the side chain interactions

   Python 1

5. alphafold3-protein-screening alphafold3-protein-screening Public

   A lightweight CLI tool to scan AlphaFold 3 outputs, aggregate confidence metrics into a single table, filter by user-defined thresholds, and export top-ranked structures.

   Python 3

6. .fa-to-.json .fa-to-.json Public

   Batch-convert single-chain FASTA (.fa/.fasta) sequences into AlphaFold Server input JSON jobs (dialect: alphafoldserver, v1)

   Python 1