A tutorial-driven blog covering bioinformatics, R programming, single-cell and bulk RNA-seq analysis, and AI-assisted research workflows. Written by Badran Elshenawy, postdoctoral researcher at the University of Oxford.
Live at: badran-elshenawy.netlify.app
| Series | Posts | Topics |
|---|---|---|
| DESeq2 | 17 | Differential expression analysis from raw counts to results |
| Single-Cell RNA-Seq | 16 | Seurat, QC, clustering, DEA, pathway analysis |
| Tidyverse | 14 | Data wrangling, ggplot2, purrr, functional programming in R |
| Foundational Genomics | 12 | Biostrings, GenomicRanges, genome arithmetic, annotation |
| Bulk RNA-Seq | 10 | End-to-end bulk RNA-seq pipeline |
| Git | 8 | Version control for researchers |
| Claude Code | 14 | AI-assisted coding with Claude — CLAUDE.md, skills, MCPs, subagents, plugins |
| Advanced scRNA-seq (Trajectories) | 6 | Pseudotime, Monocle3, RNA velocity, method selection |
| Command Line | 3 | Terminal essentials for bioinformaticians |
Plus standalone posts on VS Code, Quarto, and more. 96+ posts and growing.
- Hugo with the Coder theme
- Deployed on Netlify
- Posts authored in R Markdown and rendered via hugodown
Blog content is written by Badran Elshenawy. The Hugo Coder theme is licensed under the MIT License.