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1. diff-use/WaterFlow diff-use/WaterFlow Public

   Predicting water moelcule placements on protein surfaces using flow matching conditioned on learned protein structure embeddings.

   Python 1

2. AnnoGenie AnnoGenie Public

   A bioinformatics pipeline for the de-novo annotation of genomes using NGS data from closely related species.

   Shell 1

3. AsthmaClustering AsthmaClustering Public

   Final project for 02-680 (Machine Learning for Scientists) at CMU. Implementation of algorithms to cluster genes based on asthma severity and implementation of an asthma severity classifier.

   Jupyter Notebook 1

4. AndrewLutsky/KinomeScripts AndrewLutsky/KinomeScripts Public

   Scripts for Andrew Lutsky

   Jupyter Notebook 3

5. PromoterStrength PromoterStrength Public

   Model to predict promoter strength using embeddings generated from a DNA large language model.

   Jupyter Notebook

6. ProDy ProDy Public

   Forked from prody/ProDy

   A Python Package for Protein Dynamics Analysis

   Python