Command line utility to assist population size inference.
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Updated
Mar 30, 2026 - Python
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effective-population-size
Here are 5 public repositories matching this topic...
Nextflow pipeline to assess the impact of positive selection on Identity by Descent (IBD)-based inferences, utilizing population genetic simulations and true IBD inferences.
population-structure positive-selection identity-by-descent nextflow-pipeline effective-population-size posseleff-paper true-ibd ibd-based-inferences population-genetic-simulations
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Feb 15, 2024 - Python
Nextflow pipeline for analyzing empirical WGS data for the effect of positive selection on IBD-based inference
metadata imputation population-structure deconvolution whole-genome-sequencing infomap plasmodium-falciparum multiple-infection empirical-data ibd-inference effective-population-size posseleff-paper
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Nov 19, 2024 - Nextflow
A repository containing code for a manuscript intended for publication.
birds inbreeding population-genomics biodiversity structural-variants conservation-genomics effective-population-size
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Apr 16, 2026 - Jupyter Notebook
R package for computing variance effective population size (Ne) in stage-structured populations — implements Yonezawa et al. (2000)
r evolution r-package population-genetics genetic-drift population-ecology conservation-biology effective-population-size stage-structured fritillaria demographic-matrix
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Mar 23, 2026 - HTML
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