Estimate cyanobacteria density based on Sentinel-2 satellite imagery

CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing

This is the repository for the CTCB project

Effective classification of cyanobacteria blooms severity of small inland water bodies with AI by integrating Sentinel-2 data from GEE, DEM data from MPC and climate data from NOAA

NinjaPBR - An open-source photobioreactor to study circadian growth in microalgae and cyanobacteria

Bi-level regularized flux balance analysis of Synechococcus spp. PCC 7002

A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.

Control Scripts for Photon Systems Instruments (PSI) Bioreactor Client

RNA-seq data analysis for the role of a cryptic tRNA gene operon in the recovery from translational stress in the cyanobacterium Nostoc using bioconductor R packages

The influence of time scale on autocorrelation as an early warning indicator of regime shift

A set of MATLAB codes that simulate a model for the motion of phototactic cyanobacterial cells

Code for a pipeline to analyse phase contrast timelapse images of Cyanobacteria

Graphical User-interface for the NinjaPBR Photobioreactor, based on wxPython.

Automated DubSeq data analysis

A set of MATLAB codes that simulate a model for the motion of phototactic cyanobacterial cells

This is the repository containing the code, files, and results of the paper "Proteomics of long-term response of the desert cyanobacterium Chroococcidiopsis sp. CCMEE 029 in perchlorate-rich medium and its implications for in situ resource utilization on Mars"

Phylogeny-aware machine learning model that predicts cyanotoxin presence by learning statistical associations between clade structure and tip-level traits

BloomOS / CyanoHAB Protocol — Process governance architecture for harmful algal bloom detection and cyanotoxin risk monitoring. Deterministic validator pipeline + immutable Flight Recorder audit trail. Sovereign Process Architecture Inc. specification (Corp. 1781822-0).

The code aims at reproducing the analyses and figures presented in Louchart et al. (2025). Individual-level trait responses in natural cyanobacterial communities. The manuscript has been submitted to a journal.

Extending the long-running CyAN CI project to the newly launched NASA PACE/OCI