This is the code repository for the paper "Optimizing ODE-derived Synthetic Data for Transfer Learning in Dynamical Biological Systems".
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May 22, 2026 - Jupyter Notebook
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biological-systems
Here are 9 public repositories matching this topic...
Curated MATLAB portfolio of reduced-order physiological models in circulation, respiratory mechanics, gas exchange, and feedback control.
matlab systems-biology dynamical-systems computational-modeling biomedical-engineering hodgkin-huxley gas-exchange biological-systems cardiovascular-modeling respiratory-modeling
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Apr 22, 2026 - MATLAB
MIRELLA: A mathematical model explains the effect of miRNA (MI) REgulation on intracellular resource aLLocAtion
python systems-biology computational-biology modelling mathematical-modelling ode-model biological-systems engineering-biology biological-systems-design
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Dec 14, 2022 - Jupyter Notebook
UAI 2022: "Capturing Actionable Dynamics with Structured Latent Ordinary Differential Equations"
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Jun 18, 2024 - Jupyter Notebook
Forced ratched model of molecular motors.
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Apr 6, 2020 - Jupyter Notebook
This repository explores the geometric stability of complex biochemical networks using the VNAE framework.
bioinformatics biology computational-chemistry game-theory resilience-testing control-theory resilience decision-theory consensus-algorithm homeostasis riemannian-geometry biological-systems metabolic-modeling dissipative-systems riemannian-manifolds vnae geometric-stability
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Feb 10, 2026 - R
Final project for the course Simulation and Modeling for Biological Systems.
python epidemiology sensitivity-analysis sir-model epidemic-model python-simulation biological-systems rk4-algorithm
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May 31, 2026 - Jupyter Notebook
Bottom-up dynamical modeling of biological systems using ordinary, partial, and stochastic differential equations.
matlab biological-simulations dynamical-systems cell-cycle dynamical-modeling oscillations gillespie-algorithm matlab-scripts biological-systems biophysical-modeling
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May 16, 2024 - MATLAB
The AI that lives. — A living AI operating system with 10 biological systems. 100% local, edge-native. Android + iOS.
android kotlin swift open-source ios privacy ai bsl consciousness edge-ai on-device-ai biological-systems ai-agent llm local-ai
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Jun 29, 2026 - Python
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