Skip to content

Add support for VisiumV2 image coordinates in Seurat#20

Open
ATPs wants to merge 1 commit into
the-ouyang-lab:mainfrom
ATPs:main
Open

Add support for VisiumV2 image coordinates in Seurat#20
ATPs wants to merge 1 commit into
the-ouyang-lab:mainfrom
ATPs:main

Conversation

@ATPs
Copy link
Copy Markdown

@ATPs ATPs commented Sep 12, 2025

Updated makeShinyFilesSpatial to handle both VisiumV1 and VisiumV2 image formats in Seurat objects. VisiumV2 coordinates are now extracted from boundaries$centroids and converted to the expected format, ensuring compatibility with newer Seurat spatial data.

Updated makeShinyFilesSpatial to handle both VisiumV1 and VisiumV2 image formats in Seurat objects. VisiumV2 coordinates are now extracted from boundaries$centroids and converted to the expected format, ensuring compatibility with newer Seurat spatial data.
rroutsong added a commit to OpenOmics/ShinyCell2 that referenced this pull request Dec 8, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant