GitHub - srom/afpd: AlphaFold pulldown implementation adapted from https://github.com/KosinskiLab/AlphaPulldown · GitHub

Name		Name	Last commit message	Last commit date
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example_data		example_data
notebook		notebook
src		src
.gitignore		.gitignore
README.md		README.md

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AlphaFold pulldown

Code to prep and run AlphaFold pulldown.

Steps:

Prepare fasta file with sequences bait:protein
Run MSA search with colabfold search functionality
Run AlphaFold predictions
Score predictions with DockQ

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AlphaFold pulldown implementation adapted from https://github.com/KosinskiLab/AlphaPulldown

alphafold alphafold-multimer alphapulldown colabfold

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