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12 changes: 12 additions & 0 deletions .zenodo.json
Original file line number Diff line number Diff line change
Expand Up @@ -10,9 +10,21 @@
"orcid": "0000-0003-4692-608X",
"name": "Caswell, Thomas"
},
{
"orcid": "0000-0002-7398-1597",
"name": "Freeman, Sean W."
},
{
"orcid": "0000-0003-0243-6046",
"name": "Horowitz, Viva R."
},
{
"orcid": "0000-0003-0746-0547",
"name": "Keim, Nathan C."
},
{
"orcid": "0000-0003-2193-5369",
"name": "Lee, Antony"
},
{
"orcid": "0000-0002-0488-2237",
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60 changes: 27 additions & 33 deletions doc/introduction.rst
Original file line number Diff line number Diff line change
Expand Up @@ -59,7 +59,8 @@ Special Capabilities
in a routine that combines linking and feature-finding.
* Feature-finding and trajectory-linking works on **images with any number of dimensions**,
making possible some creative applications.
* **Uncertainty is estimated** following a method `described in this paper <http://dx.doi.org/10.1529/biophysj.104.042457>`__ by Savin and Doyle.
* **Uncertainty is estimated** following a method `described in this paper <http://dx.doi.org/10.1529/biophysj.104.042457>`__
by Savin and Doyle.
* **High-performance** numba acceleration is used only if
if available. Since these can be tricky to install on some machines,
the code will automatically fall back on slower pure Python implementations
Expand Down Expand Up @@ -114,38 +115,31 @@ Peter J Lu https://github.com/peterlu/PLuTARC_centerfind2D
Thomas A Caswell https://github.com/tacaswell/tracking C++
============================ =================================================== =========================

Core Contributors
^^^^^^^^^^^^^^^^^

* **Casper van der Wel** anisotropic 3D feature-finding, plotting and analyses, framework
for least-squares refinement, combined linking and feature finding
* **Daniel Allan** feature-finding, uncertainty estimation,
motion characterization and discrimination, plotting tools, tests
* **Nathan Keim** alternative trajectory-linking implementations, major
speed-ups, prediction, adaptive search
* **Thomas Caswell** multiple implementations of sophisticated trajectory-linking, tests


Support
^^^^^^^

This package was developed in part by Daniel Allan, as part of his
PhD thesis work on microrheology in Robert L. Leheny's group at Johns Hopkins
University in Baltimore, MD, USA. The work was supported by the National Science Foundation
under grant number CBET-1033985. Dan can be reached at dallan@pha.jhu.edu.

This package was developed in part by Thomas A Caswell as part of his
PhD thesis work in Sidney R Nagel's and Margaret L Gardel's groups at
the University of Chicago, Chicago IL, USA. This work was supported in
part by NSF Grant DMR-1105145 and NSF-MRSEC DMR-0820054. Tom can be
reached at tcaswell@gmail.com.

This package was developed in part by Nathan C. Keim at Cal Poly,
San Luis Obispo, California, USA and supported by NSF Grant DMR-1708870.
Portions were also developed at the University of Pennsylvania,
Philadelphia, USA, supported by NSF-MRSEC DMR-1120901.

This package was developed in part by Casper van der Wel, as part of his
PhD thesis work in Daniela Kraft’s group at the Huygens-Kamerlingh-Onnes laboratory,
Institute of Physics, Leiden University, The Netherlands. This work was
supported by the Netherlands Organisation for Scientific Research (NWO/OCW).
* Daniel Allan's work on this project was part of his PhD thesis work on
microrheology in Robert L. Leheny's group at Johns Hopkins University in
Baltimore, MD, USA. The work was supported by the National Science Foundation
under grant number CBET-1033985.
* Thomas A Caswell's work on this project was part of his PhD thesis work in
Sidney R Nagel's and Margaret L Gardel's groups at the University of Chicago,
Chicago IL, USA. This work was supported in part by NSF Grant DMR-1105145 and
NSF-MRSEC DMR-0820054.
* Sean Freeman's contributions were supported by INCUS, a NASA Earth Venture
Mission, funded by NASA's Science Mission Directorate and managed through the
Earth System Science Pathfinder Program Office under contract number
80LARC22DA011.
* Viva R. Horowitz's contributions were supported by Hamilton College.
* Nathan C. Keim's work on this project was supported in part by NSF-MRSEC
DMR-1120901 (University of Pennsylvania, Philadelphia PA, USA), NSF Grant
DMR-1708870 (Cal Poly, San Luis Obispo CA, USA), and NSF Grant DMR-2346012
(The Pennsylvania State University, University Park PA, USA).
* Antony Lee's work on the package took place, in part, during his post-doc in
Laurent Cognet's group at the Université de Bordeaux. This work was supported
by a post-doctoral fellowship from the Fondation ARC pour la Recherche sur le
Cancer.
* Casper van der Wel's work on this project was part of his PhD thesis work in
Daniela Kraft's group at the Huygens-Kamerlingh-Onnes laboratory, Institute of
Physics, Leiden University, The Netherlands. This work was supported by the
Netherlands Organisation for Scientific Research (NWO/OCW).
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