Skip to content

minor corrections in BCF2.2 GT example table #833

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
d-cameron merged 1 commit into from
Sep 9, 2025
Merged

minor corrections in BCF2.2 GT example table #833

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions VCFv4.3.tex
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1880,8 +1880,8 @@ \subsubsection{Type encoding}
./. & where both alleles are missing & 0x00 00 \\ \hline
0 & as a haploid it is represented by a single byte & 0x02 \\ \hline
1 & as a haploid it is represented by a single byte & 0x04 \\ \hline
0/1/2 & is tetraploid, with alleles & 0x02 04 06 \\ \hline
$0/1\mid2$ & is tetraploid with a single phased allele & 0x02 04 07 \\ \hline
0/1/2 & is triploid, with alleles & 0x02 04 06 \\ \hline
$0/1\mid2$ & is triploid with a single phased allele & 0x02 04 07 \\ \hline
0 and 0/1 & pad out the final allele for the haploid individual & 0x02 81 02 04\\ \hline
\end{tabular}
\normalsize
Expand Down
6 changes: 3 additions & 3 deletions VCFv4.4.tex
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2309,9 +2309,9 @@ \subsubsection{Type encoding}
./. & where both alleles are missing & 0x00 00 \\ \hline
0 & as an implicitly phased haploid it is represented by a single byte & 0x03 \\ \hline
1 & as an implicitly phased haploid it is represented by a single byte & 0x05 \\ \hline
0/1/2 & is tetraploid, with alleles & 0x02 04 06 \\ \hline
$0/1\mid2$ & is tetraploid with a single phased allele & 0x02 04 07 \\ \hline
0 and 0/1 & pad out the final allele for the haploid individual & 0x02 81 02 04\\ \hline
0/1/2 & is triploid, with alleles & 0x02 04 06 \\ \hline
$0/1\mid2$ & is triploid with a single phased allele & 0x02 04 07 \\ \hline
0 and 0/1 & pad out the final allele for the haploid individual & 0x03 81 02 04\\ \hline
\end{tabular}
\normalsize

Expand Down
6 changes: 3 additions & 3 deletions VCFv4.5.tex
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2477,9 +2477,9 @@ \subsubsection{Type encoding}
./. & where both alleles are missing & 0x00 00 \\ \hline
0 & as an implicitly phased haploid it is represented by a single byte & 0x03 \\ \hline
1 & as an implicitly phased haploid it is represented by a single byte & 0x05 \\ \hline
0/1/2 & is tetraploid, with alleles & 0x02 04 06 \\ \hline
$0/1\mid2$ & is tetraploid with a single phased allele & 0x02 04 07 \\ \hline
0 and 0/1 & pad out the final allele for the haploid individual & 0x02 81 02 04\\ \hline
0/1/2 & is triploid, with alleles & 0x02 04 06 \\ \hline
$0/1\mid2$ & is triploid with a single phased allele & 0x02 04 07 \\ \hline
0 and 0/1 & pad out the final allele for the haploid individual & 0x03 81 02 04\\ \hline
\end{tabular}
\normalsize

Expand Down