IBE PhD Course: Introduction to Bioinfomatics

Materials created by Marina Álvarez and Paula Esteller.

Crash course for 1st Year PhD students on the basics of bioinformatics (July 2022).

Part I. Basics of bash

1. Slides
2. Practicum (with answers)

Part II. R for Bioinformatics

1. Slides
2. Practicum
   1. Introduction to Rmarkdown: Intro2Rmarkdown_IBECourse.nb.html
   2. Using R to explore expression data: R4Bioinformatics_IBECourse2022.nb.html

Recommended literature and other resources

• Buffalo, Vince. Bioinformatics data skills (2015, O'Reilly)
• GeeksforGeeks webpage with awk command examples (and others)
• Bash scripting cheatsheet
• Rstudio cheatsheets from RStudio's github
• Markdown Guide: Basic Syntax