feat: add accbase target for ATAC-seq/DNase-seq discovery#25
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Add support for discovering chromatin accessibility datasets (ATAC-seq, scATAC-seq, DNase-seq) from GEO and uploading them to the accbase namespace in PEPhub. - Add "accbase" to valid targets in CLI - Add ACCBASE_FINDER_FILTER and ACCBASE_MAX_SIZE constants - Add accbase branches in queuer (assay-type filter) and uploader - Add accbase_uploader.yml and accbase_checker.yml GitHub Actions - Update README with accbase documentation
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Summary
atacbasetarget for discovering chromatin accessibility datasets (ATAC-seq, scATAC-seq, DNase-seq) from GEOatacbasenamespace in PEPhubTest plan
geopephub run-queuer --target atacbaseto populate namespace