Repositories list

• pqtl_susie

  Public
  A snakemake pipeline for fine-mapping protein QTLs using SuSiE

  R

  •00 forks•00 stars•1010 issues•00 pull requests•Updated Aug 3, 2026Aug 3, 2026

• gwaspipe

  Public
  GWASPipe: Automated Genetic Association Data Management and Workflow Standardization

  computational-data-hub

  computational-data-hub

  Python

  •33 forks•11 star•00 issues•00 pull requests•Updated Aug 3, 2026Aug 3, 2026

• gwasstudio

  Public
  Powerful CLI tool designed for efficient storage, retrieval, and querying of genomic summary statistics

  computational-data-hub

  computational-data-hub

  Python

  •00 forks•22 stars•1515 issues•00 pull requests•Updated Jul 27, 2026Jul 27, 2026

• pqtl_believe_paper

  Public
  Repository to gather your any kind of scripts analyzing pQTL data belonged to the Believe study.

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 17, 2026Jul 17, 2026

• pqtl_meta_paper

  Public
  Scripts for pQTLs meta-analysis paper

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 15, 2026Jul 15, 2026

• Literature_Review_for_Believe

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 26, 2026Jun 26, 2026

• harmonization_pipeline

  Public
  snakemakeintervalharmonization+ 4

  snakemakeintervalharmonizationchrisgwas-summary-statisticssnakemake-pipelinebelieve

  Python

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jun 12, 2026Jun 12, 2026

• MR_exposure_breastfeeding-

  Public
  Analyses code for the project Mendelian randomization framework to study maternal risk factors driving breastfeeding success

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 6, 2026Jun 6, 2026

• pqtl_downstream

  Public
  snakemakemappinginterval+ 5

  snakemakemappingintervalhotspotliterature-reviewmendelian-randomizationpqtlsnakemake-pipeline

  R

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jun 4, 2026Jun 4, 2026

• genomics_QC_pipeline

  Public
  snakemakeintervalgenetic-data+ 2

  snakemakeintervalgenetic-datasnakemake-pipelineimputed

  Python

  •00 forks•00 stars•00 issues•11 pull request•Updated May 19, 2026May 19, 2026

• pqtl_locuszoom

  Public
  Regional association plot of the signals in the pQTL project

  qtlpqtlgwas-summary-statistics

  qtlpqtlgwas-summary-statistics

  Python

  •00 forks•11 star•44 issues•00 pull requests•Updated May 15, 2026May 15, 2026

• containers

  Public
  dockerdocker-containerbioinformatics-tool

  dockerdocker-containerbioinformatics-tool

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 5, 2026May 5, 2026

• pqtl_coloc

  Public
  Perform Colocalization analysis for pQTLs using tileDB

  R

  •00 forks•00 stars•22 issues•00 pull requests•Updated Apr 26, 2026Apr 26, 2026

• ld_pipe

  Public
  Compute LD from list of variants in different hotspots

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• pqtl_liftover

  Public
  A Repository to Perform Genomic Liftover

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• mmid

  Public
  Multi-Modal Integration and Downstream analyses for healthcare analytics

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 23, 2026Mar 23, 2026

• SNPgen

  Public
  Official implementation of "SNPgen: Phenotype-Supervised Genotype Representation and Synthetic Data Generation via Latent Diffusion" (arXiv 2026)

  Python

  •

  MIT License

  •11 fork•22 stars•00 issues•00 pull requests•Updated Mar 12, 2026Mar 12, 2026

• pqtl_conditional

  Public
  Fine mapping analysis within the pQTL pipeline project

  snakemakeintervalqtl+ 6

  snakemakeintervalqtlgctacolocalizationgwas-summary-statisticssnakemake-pipelinecojocoloc

  R

  •

  MIT License

  •00 forks•22 stars•22 issues•22 pull requests•Updated Feb 28, 2026Feb 28, 2026

• Drug-adherence-trajectories

  Public
  Drug adherence trajectories scripts for analysis in Regione Lombardia Data

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 2, 2026Feb 2, 2026

• UndervaccinationRL

  Public
  Code used to produce the analysis of the covid-19 undervaccination manuscript in Lomabardy

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 2, 2026Feb 2, 2026

• pqtl-believe-interval

  Public
  Working space for Believe Interval projects analysis

  intervalpqtlbelieve

  intervalpqtlbelieve

  R

  •55 forks•22 stars•00 issues•00 pull requests•Updated Jan 9, 2026Jan 9, 2026

• pqtl_ldscore

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 3, 2025Dec 3, 2025

• cdh_in_a_box

  Public
  computational-data-hub

  computational-data-hub

  Makefile

  •00 forks•22 stars•00 issues•00 pull requests•Updated Nov 18, 2025Nov 18, 2025

• Extraction-pipelines-RL

  Public
  Pipelines for extracting information/exposure from RL data

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 28, 2025Oct 28, 2025

• pqtl_annotation

  Public
  Annotating variants or loci within the pQTL pipeline project

  R

  •00 forks•00 stars•44 issues•00 pull requests•Updated Oct 6, 2025Oct 6, 2025

• pqtl_mif

  Public
  Downstream analyses for the signals located in MIF region

  R

  •00 forks•00 stars•33 issues•00 pull requests•Updated Sep 16, 2025Sep 16, 2025

• gwasstudio_example_data

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 20, 2025Jul 20, 2025

• ds4hb_workshop_t1_1

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 10, 2025Jul 10, 2025

• ukb_pgs

  Public
  A help to construct genetic score in UKB for Andrea Lampis

  R

  •00 forks•00 stars•33 issues•00 pull requests•Updated May 19, 2025May 19, 2025

• sumstats_load_pipeline_in_tiledb

  Public
  computational-data-hub

  computational-data-hub

  Python

  •00 forks•00 stars•11 issue•00 pull requests•Updated Apr 5, 2025Apr 5, 2025