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    21 repositories

    • scLinguist

      Public
      The official repo for scLinguist
      Python
      •
      MIT License
      •0•9•2•0•Updated Mar 25, 2026Mar 25, 2026

    • dance

      Public
      DANCE: a deep learning library and benchmark platform for single-cell analysis
      pythondata-sciencebenchmark
      pythondata-sciencebenchmarkmachine-learningbioinformaticsdeep-learningcomputational-biologydancesingle-cellmultimodality
      Python
      •
      BSD 2-Clause "Simplified" License
      •36•387•27•8•Updated Mar 19, 2026Mar 19, 2026

    • awesome-foundation-model-single-cell-papers

      Public
      MIT License
      •44•427•3•2•Updated Jan 21, 2026Jan 21, 2026

    • awesome-genetic-perturbation-papers

      Public
      0•5•0•0•Updated Aug 20, 2025Aug 20, 2025

    • Mem-GAN

      Public
      A generative model for pseudo membrane generation of single-cell imaging in fluorescent microscopy
      Python
      •
      MIT License
      •0•8•0•0•Updated Jun 28, 2025Jun 28, 2025

    • awesome-AI_Scientist-agents-biology-papers

      Public
      3•55•6•0•Updated Apr 20, 2025Apr 20, 2025

    • awesome-multimodal-multiomic-multiscale-papers

      Public
      0•2•0•0•Updated Apr 20, 2025Apr 20, 2025

    • awesome-deep-learning-single-cell-papers

      Public
      Apache License 2.0
      •113•846•13•4•Updated Apr 20, 2025Apr 20, 2025

    • awesome-sythetic-single-cell-data-papers

      Public
      0•1•0•0•Updated Apr 20, 2025Apr 20, 2025

    • awesome-foundation-model-DNA-papers

      Public
      0•3•0•0•Updated Jan 13, 2025Jan 13, 2025

    • test.io

      Public
      test
      0•0•0•0•Updated Sep 22, 2024Sep 22, 2024

    • SpatialCTD

      Public
      A large scale atlas coming with Graph Neural Network solution for spatial cell type deconvolution
      Jupyter Notebook
      •
      MIT License
      •1•43•2•0•Updated Sep 15, 2024Sep 15, 2024

    • scDiff

      Public
      scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
      Python
      •
      MIT License
      •4•34•3•0•Updated Aug 13, 2024Aug 13, 2024

    • focus

      Public
      Python
      •0•5•2•0•Updated Aug 3, 2024Aug 3, 2024

    • scLLMBench

      Public
      scLLMBench: A fexible framework for accelerating single-cell foundation model benchmarking
      MIT License
      •1•0•0•0•Updated Apr 8, 2024Apr 8, 2024

    • CellPLM

      Public
      Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •14•102•10•0•Updated Mar 28, 2024Mar 28, 2024

    • awesome-molecule-protein-pretrain-papers

      Public
      3•46•0•0•Updated Mar 11, 2024Mar 11, 2024

    • scMoMem

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • scMoFormer

      Public
      Single-Cell Multimodal Prediction via Transformer
      Python
      •
      MIT License
      •3•27•2•0•Updated Feb 7, 2024Feb 7, 2024

    • dance-tutorials

      Public
      Jupyter Notebook
      •
      MIT License
      •0•5•1•0•Updated Nov 13, 2023Nov 13, 2023

    • awesome-bio-chatgpt

      Public
      MIT License
      •0•22•0•0•Updated Apr 27, 2023Apr 27, 2023
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