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    • The official repo for scLinguist
      Python
      MIT License
      0920Updated Mar 25, 2026Mar 25, 2026
    • dance

      Public
      DANCE: a deep learning library and benchmark platform for single-cell analysis
      Python
      BSD 2-Clause "Simplified" License
      36387278Updated Mar 19, 2026Mar 19, 2026
    • MIT License
      4442732Updated Jan 21, 2026Jan 21, 2026
    • 0500Updated Aug 20, 2025Aug 20, 2025
    • Mem-GAN

      Public
      A generative model for pseudo membrane generation of single-cell imaging in fluorescent microscopy
      Python
      MIT License
      0800Updated Jun 28, 2025Jun 28, 2025
    • 35560Updated Apr 20, 2025Apr 20, 2025
    • 0200Updated Apr 20, 2025Apr 20, 2025
    • Apache License 2.0
      113846134Updated Apr 20, 2025Apr 20, 2025
    • 0100Updated Apr 20, 2025Apr 20, 2025
    • 0300Updated Jan 13, 2025Jan 13, 2025
    • test.io

      Public
      test
      0000Updated Sep 22, 2024Sep 22, 2024
    • A large scale atlas coming with Graph Neural Network solution for spatial cell type deconvolution
      Jupyter Notebook
      MIT License
      14320Updated Sep 15, 2024Sep 15, 2024
    • scDiff

      Public
      scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
      Python
      MIT License
      43430Updated Aug 13, 2024Aug 13, 2024
    • focus

      Public
      Python
      0520Updated Aug 3, 2024Aug 3, 2024
    • scLLMBench: A fexible framework for accelerating single-cell foundation model benchmarking
      MIT License
      1000Updated Apr 8, 2024Apr 8, 2024
    • CellPLM

      Public
      Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
      Jupyter Notebook
      BSD 2-Clause "Simplified" License
      14102100Updated Mar 28, 2024Mar 28, 2024
    • 34600Updated Mar 11, 2024Mar 11, 2024
    • scMoMem

      Public
      BSD 3-Clause "New" or "Revised" License
      0000Updated Feb 9, 2024Feb 9, 2024
    • Single-Cell Multimodal Prediction via Transformer
      Python
      MIT License
      32720Updated Feb 7, 2024Feb 7, 2024
    • Jupyter Notebook
      MIT License
      0510Updated Nov 13, 2023Nov 13, 2023
    • MIT License
      02200Updated Apr 27, 2023Apr 27, 2023
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