colzette

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colzette A Parametric Model for oilseed rape and legume.

Heat map representation of the surfacic density of energy absorbed by an intercrop of Fababean and Rapessed plants.

Status

Python package

License

CecILL-C

Installation

Conda must be installed, please follow the instructions and recommendations here.

for user

Creating a new conda environment with colzette and its dependencies installed

mamba create -n colzette -c openalea3/label/dev -c openalea3 -c conda-forge openalea.colzette

activate the environment

mamba activate colzette

for developer

mamba env create -f ./conda/environment.yml

activate the environment

mamba activate colzette_dev

This will create a conda environment with dependencies installed and install colzette in editable state.

Basic usage

Open a terminal and activate the conda environment:

mamba activate colzette

Then, you can either use ipython:

ipython

In [1]: import openalea.colzette

or you can run the jupyter notebook in doc/examples. First install jupyterlab and òpenalea.widgets

mamba install -c openalea3 -c conda-forge jupyterlab openalea.widgets

then, if you have cloned the repository, in doc/examples launch jupyter-lab

cd doc/examples
jupyter-lab

otherwise, you can download the notebooks, launch jupyter-lab

jupyter-lab

and, in the file browser on the left in jupyter-lab, look for the downloaded notebooks.

Contributors

Thanks to all that contribute making this package what it is !