AMP_SLE_Kidney

This repo provides code for the analysis of AMP SLE Phase 2 data from Gurajala, Sugiarto, Curtis, Eisenhaure, et al, biorxiv, 2025.

Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
SAM_identification		SAM_identification
SLE_pbmc_preprocessing		SLE_pbmc_preprocessing
TCAT		TCAT
b_cell_clonality		b_cell_clonality
blood_tissue_integration		blood_tissue_integration
cell-seq-scripts-final		cell-seq-scripts-final
cellChat		cellChat
clustering		clustering
cna		cna
de		de
figure_notebooks		figure_notebooks
libs		libs
masc		masc
misc		misc
nuc-seq-scripts-final		nuc-seq-scripts-final
pbmc_symphony		pbmc_symphony
pseudotime		pseudotime
qualityControl		qualityControl
spatialData		spatialData
._SupplementaryTable3-DEG.xlsx		._SupplementaryTable3-DEG.xlsx
._SupplementaryTable4-GSEA.xlsx		._SupplementaryTable4-GSEA.xlsx
.gitignore		.gitignore
DEG_results.xlsx		DEG_results.xlsx
GSEA_results.xlsx		GSEA_results.xlsx
README.md		README.md

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