Htmlwidget

.Rbuildignore

@@ -7,7 +7,6 @@
 ^playground$
 .*~
 ^\.git
-.*\.png
 ^.*\.Rproj$
 R/zzz\.R
 demo/gexfplot\.R
@@ -16,9 +15,21 @@ demo/gexfplot\.R
 ^\.travis\.yml$
 ^appveyor\.yml$
 ^codecov\.yml$
-^readme\.md$
-^readme\.rmd$
+^README\.qmd$
 ^dependencies$
-^makefile$
+^Makefile$
 ^LICENSE\.md$
 ^tests/rundemos\.R$
+^_pkgdown\.yml$
+^docs$
+^pkgdown
+.+\.tar\.gz$
+^cran-comments\.md$
+inst/htmlwidgets
+^docker$
+^\.github.*
+^paper$
+^CODE_OF_CONDUCT\.md$
+\.vscode
+README\.html
+^lesmiserables$

.github/FUNDING.yml

@@ -0,0 +1,13 @@
+# These are supported funding model platforms
+
+github: gvegayon # Replace with up to 4 GitHub Sponsors-enabled usernames e.g., [user1, user2]
+patreon: # Replace with a single Patreon username
+open_collective: # Replace with a single Open Collective username
+ko_fi: # Replace with a single Ko-fi username
+tidelift: # Replace with a single Tidelift platform-name/package-name e.g., npm/babel
+community_bridge: # Replace with a single Community Bridge project-name e.g., cloud-foundry
+liberapay: # Replace with a single Liberapay username
+issuehunt: # Replace with a single IssueHunt username
+otechie: # Replace with a single Otechie username
+lfx_crowdfunding: # Replace with a single LFX Crowdfunding project-name e.g., cloud-foundry
+custom: # Replace with up to 4 custom sponsorship URLs e.g., ['link1', 'link2']

.github/workflows/ci.yml

@@ -0,0 +1,76 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+#
+# NOTE: This workflow is overkill for most R packages and
+# check-standard.yaml is likely a better choice.
+# usethis::use_github_action("check-standard") will install it.
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: R-CMD-check-final
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macOS-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: macOS-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: windows-latest, r: 'devel', http-user-agent: 'release'}
+          # Use older ubuntu to maximise backward compatibility
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        if: ${{ matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'release' }}
+        with:
+          args: 'c("--as-cran", "--no-manual")'
+          upload-snapshots: false
+          upload-results: false
+          check-dir: '"check"'
+          error-on: '"warning"'
+
+      - uses: r-lib/actions/check-r-package@v2
+        if: ${{ matrix.config.os != 'ubuntu-latest' || matrix.config.r != 'release' }}
+        with:
+          upload-snapshots: false
+          upload-results: false
+          check-dir: '"check"'
+          error-on: '"warning"'
+
+      # Upload the built package as an artifact
+      - uses: actions/upload-artifact@v2
+        if: ${{ matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'release' }}
+        with:
+          name: ${{ matrix.config.os }}-pkg
+          path: ${{ github.workspace }}/*.tar.gz

.github/workflows/website.yml

@@ -0,0 +1,27 @@
+name: rgexf website
+
+on: [push, pull_request]
+
+env:
+  cntr: gvegayon/rgexf:latest
+
+jobs:
+  build:
+    runs-on: Ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Container
+        run: docker pull ${cntr}
+
+      - name: Building website
+        run: |
+          docker run --rm -i -v ${PWD}:/home/mnt -w /home/mnt ${cntr} Rscript -e 'pkgdown::build_site()'
+          sudo cp -r lesmiserables docs/ 
+
+      - name: Deploy
+        uses: peaceiris/actions-gh-pages@v3
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: ./docs

.gitignore

@@ -15,3 +15,6 @@
 *.pdf
 .Rproj.user
 inst/doc
+docs/
+
+/.quarto/

.travis.yml

@@ -4,19 +4,35 @@ language: R
 sudo: false
 cache: packages
 
-r:
-  - release
-#  - devel # Not working
+matrix:
+  include:
+    # - os: linux
+    #  r: oldrel
+    - os: linux
+      r: release
+      env:
+        - R_CODECOV=true
+        - BUILD_WWW_HERE=true
+    - os: linux
+      r: devel
+    - os: osx
+      osx_image: xcode10.2
 
-os:
-  - linux
-  - osx
-
-osx_image: xcode7.3
 
 env:
  global:
    - CRAN: http://cran.rstudio.com
 
 after_success:
   - if [ $TRAVIS_OS_NAME == "linux" ]; then Rscript -e 'covr::codecov()'; fi
+
+  # For automatic deploy of the website
+before_deploy: Rscript -e 'remotes::install_cran("pkgdown")'
+deploy:
+  provider: script
+  script: Rscript -e 'pkgdown::deploy_site_github()'
+  skip_cleanup: true
+  on:
+    branch: master
+    condition: $BUILD_WWW_HERE = true
+

CODE_OF_CONDUCT.md

@@ -0,0 +1,128 @@
+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+We as members, contributors, and leaders pledge to make participation in our
+community a harassment-free experience for everyone, regardless of age, body
+size, visible or invisible disability, ethnicity, sex characteristics, gender
+identity and expression, level of experience, education, socio-economic status,
+nationality, personal appearance, race, religion, or sexual identity and
+orientation.
+
+We pledge to act and interact in ways that contribute to an open, welcoming,
+diverse, inclusive, and healthy community.
+
+## Our Standards
+
+Examples of behavior that contributes to a positive environment for our
+community include:
+
+* Demonstrating empathy and kindness toward other people
+* Being respectful of differing opinions, viewpoints, and experiences
+* Giving and gracefully accepting constructive feedback
+* Accepting responsibility and apologizing to those affected by our mistakes,
+and learning from the experience
+* Focusing on what is best not just for us as individuals, but for the overall
+community
+
+Examples of unacceptable behavior include:
+
+* The use of sexualized language or imagery, and sexual attention or
+advances of any kind
+* Trolling, insulting or derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or email
+address, without their explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+professional setting
+
+## Enforcement Responsibilities
+
+Community leaders are responsible for clarifying and enforcing our standards
+of acceptable behavior and will take appropriate and fair corrective action in
+response to any behavior that they deem inappropriate, threatening, offensive,
+or harmful.
+
+Community leaders have the right and responsibility to remove, edit, or reject
+comments, commits, code, wiki edits, issues, and other contributions that are
+not aligned to this Code of Conduct, and will communicate reasons for moderation
+decisions when appropriate.
+
+## Scope
+
+This Code of Conduct applies within all community spaces, and also applies
+when an individual is officially representing the community in public spaces.
+Examples of representing our community include using an official e-mail
+address, posting via an official social media account, or acting as an appointed
+representative at an online or offline event.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported to the community leaders responsible for enforcement at [INSERT CONTACT
+METHOD]. All complaints will be reviewed and investigated promptly and fairly.
+
+All community leaders are obligated to respect the privacy and security of the
+reporter of any incident.
+
+## Enforcement Guidelines
+
+Community leaders will follow these Community Impact Guidelines in determining
+the consequences for any action they deem in violation of this Code of Conduct:
+
+### 1. Correction
+
+**Community Impact**: Use of inappropriate language or other behavior deemed
+unprofessional or unwelcome in the community.
+
+**Consequence**: A private, written warning from community leaders, providing
+clarity around the nature of the violation and an explanation of why the
+behavior was inappropriate. A public apology may be requested.
+
+### 2. Warning
+
+**Community Impact**: A violation through a single incident or series of
+actions.
+
+**Consequence**: A warning with consequences for continued behavior. No
+interaction with the people involved, including unsolicited interaction with
+those enforcing the Code of Conduct, for a specified period of time. This
+includes avoiding interactions in community spaces as well as external channels
+like social media. Violating these terms may lead to a temporary or permanent
+ban.
+
+### 3. Temporary Ban
+
+**Community Impact**: A serious violation of community standards, including
+sustained inappropriate behavior.
+
+**Consequence**: A temporary ban from any sort of interaction or public
+communication with the community for a specified period of time. No public or
+private interaction with the people involved, including unsolicited interaction
+with those enforcing the Code of Conduct, is allowed during this period.
+Violating these terms may lead to a permanent ban.
+
+### 4. Permanent Ban
+
+**Community Impact**: Demonstrating a pattern of violation of community
+standards, including sustained inappropriate behavior, harassment of an
+individual, or aggression toward or disparagement of classes of individuals.
+
+**Consequence**: A permanent ban from any sort of public interaction within the
+community.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage],
+version 2.0,
+available at https://www.contributor-covenant.org/version/2/0/
+code_of_conduct.html.
+
+Community Impact Guidelines were inspired by [Mozilla's code of conduct
+enforcement ladder](https://github.com/mozilla/diversity).
+
+[homepage]: https://www.contributor-covenant.org
+
+For answers to common questions about this code of conduct, see the FAQ at
+https://www.contributor-covenant.org/faq. Translations are available at https://
+www.contributor-covenant.org/translations.

ChangeLog

@@ -1,3 +1,19 @@
+2020-02-11  George G. Vega Yon <g.vegayon@gmail.com>
+
+	* We won't be using this any more.
+
+
+2018-02-05  George G. Vega Yon <g.vegayon@gmail.com>
+
+	* R/bugs.r: Moving checking functions to a single list.
+
+	* R/igraph.r: Fixing bug when the id label was not present. Also cleaning code.
+
+	* R/rgexf.r: Better rescale for gexf-js.
+
+	* tests/testthat/*.r: New tests.
+
+
 2017-11-27  George G. Vega Yon <g.vegayon@gmail.com>
 	* R/bugs.r: Function to map colors of a single node.