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More modular plotting code for LASSO range scripts

Status: Open.

#73 In greenelab/pancancer-evaluation;

· jjc2718 opened on Feb 27, 2023

Quantiles vs. linear "bins" in LASSO range box plots

Status: Open.

#70 In greenelab/pancancer-evaluation;

· jjc2718 opened on Feb 9, 2023

Tweak LASSO coefficient range to be more uniform

Status: Open.

#69 In greenelab/pancancer-evaluation;

· jjc2718 opened on Feb 9, 2023

Mutation prediction outstanding issues/updates

Status: Open.

#53 In greenelab/pancancer-evaluation;

· jjc2718 opened on Sep 8, 2022

Look further into label imbalance

research question

Status: Open.

#38 In greenelab/pancancer-evaluation;

· jjc2718 opened on Dec 1, 2020

Coefficient stability: gene dropout/pathway aggregation experiments

research question

Status: Open.

#32 In greenelab/pancancer-evaluation;

· jjc2718 opened on Oct 19, 2020

Faster recognition of experiments that have already run (or skipped)

enhancementNew feature or requestNew feature or request

Status: Open.

#28 In greenelab/pancancer-evaluation;

· jjc2718 opened on Oct 5, 2020

Look into pan-cancer coefficients for cancer type

research question

Status: Open.

#23 In greenelab/pancancer-evaluation;

· jjc2718 opened on Sep 21, 2020

PCA of individual cancer types

research question

Status: Open.

#19 In greenelab/pancancer-evaluation;

· jjc2718 opened on Aug 27, 2020

Do highly mutated examples from explore_data script make sense?

research question

Status: Open.

#18 In greenelab/pancancer-evaluation;

· jjc2718 opened on Aug 27, 2020

Add statistical testing to compare single-cancer and pan-cancer results

enhancementNew feature or requestNew feature or request

research question

Status: Open.

#15 In greenelab/pancancer-evaluation;

· jjc2718 opened on Aug 24, 2020

Save/load expression data as pickled dataframe instead of tsv file

enhancementNew feature or requestNew feature or request

Status: Open.

#13 In greenelab/pancancer-evaluation;

· jjc2718 opened on Aug 21, 2020