cBioPortal · Rima-Waleed · Jun 8, 2026 · Jun 11, 2026
diff --git a/public/alk_msk_2026/case_lists/cases_all.txt b/public/alk_msk_2026/case_lists/cases_all.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: alk_msk_2026
+stable_id: alk_msk_2026_all
+case_list_name: All samples
+case_list_description: All samples (90 samples)
+case_list_category: all_cases_in_study
+case_list_ids: s_C_DD273P_P002_d01	P-0011018-T01-IM5	s_C_V2PTM9_P003_d02	P-0023000-T01-IM6	s_C_C69YRJ_X001_d01	P-0031827-T03-IM6	P-0002217-T02-IM3	P-0022184-T04-IM6	P-0040732-T02-IM6	P-0016960-T01-IM6	s_C_P25VME_X003_d03	s_C_XT37HY_P003_d01	P-0037982-T01-IM6	P-0039320-T01-IM6	s_C_2KK39D_P003_d01	P-0054252-T01-IM6	P-0034334-T02-IM7	P-0009343-T01-IM5	s_C_M2FL7U_P002_d01	s_C_AXH9L5_P002_d01	P-0001811-T01-IM3	P-0019513-T01-IM6	P-0013202-T01-IM5	P-0003297-T01-IM5	s_C_F8TV71_P004_d01	s_C_6NUC1Y_P003_d02	s_C_W0VA7R_P002_d01	P-0084458-T01-IM7	P-0068155-T02-IM7	P-0008322-T01-IM5	P-0045912-T02-IM6	P-0034334-T01-IM6	s_C_JAEWU9_X001_d01	s_C_J7P8V8_P003_d01	s_C_1CTKX4_X001_d01	P-0031283-T01-IM6	s_C_9HH8K5_P003_d02	P-0019533-T01-IM6	s_C_JMLR60_P004_d03	P-0021693-T01-IM6	P-0022184-T01-IM6	s_C_45KUWM_P002_d01	P-0048102-T02-IM6	s_C_TRMRMA_P003_d02	P-0031827-T06-IM7	P-0010177-T01-IM5	s_C_86H8JC_X004_d04	s_C_49XY2L_X001_d	P-0032170-T01-IM6	P-0002117-T01-IM3	s_C_59HVFF_P002_d01	P-0020408-T01-IM6	s_C_9A9P95_P004_d03	P-0055607-T02-IM6	P-0068155-T05-IM7	s_C_7FAELW_P005_d04	P-0057391-T02-IM6	P-0029971-T01-IM6	P-0022509-T01-IM6	P-0036106-T01-IM6	P-0038772-T01-IM6	P-0024907-T01-IM6	s_C_5U942R_P002_d01	P-0021191-T01-IM6	s_C_A2TC5X_P003_d02	P-0059257-T02-IM7	s_C_5UT56Y_P002_d01	P-0030808-T01-IM6	s_C_7RX76D_P002_d01	P-0016280-T01-IM6	s_C_KUDP1C_P002_d01	P-0012778-T02-IM6	s_C_7P9U2X_M003_d01	P-0087669-T03-IM7	s_C_3NJUR7_P002_d01	s_C_A7KTKC_P004_d02	s_C_9F0RMP_M005_d02	P-0029750-T01-IM6	P-0031827-T02-IM6	P-0018280-T01-IM6	P-0022509-T03-IM7	s_C_RPRH27_X001_d01	s_C_8RRAT3_P001_d01	P-0002024-T01-IM3	s_C_R0HF7T_P003_d02	P-0027860-T01-IM6	s_C_M584V5_P002_d01	s_C_7P9U2X_M004_d02	P-0078722-T02-IM7	P-0040600-T01-IM6
diff --git a/public/alk_msk_2026/case_lists/cases_cna.txt b/public/alk_msk_2026/case_lists/cases_cna.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: alk_msk_2026
+stable_id: alk_msk_2026_cna
+case_list_name: Samples with CNA data
+case_list_description: Samples with CNA data (90 samples)
+case_list_category: all_cases_with_cna_data
+case_list_ids: s_C_DD273P_P002_d01	P-0011018-T01-IM5	s_C_V2PTM9_P003_d02	P-0023000-T01-IM6	s_C_C69YRJ_X001_d01	P-0031827-T03-IM6	P-0002217-T02-IM3	P-0022184-T04-IM6	P-0040732-T02-IM6	P-0016960-T01-IM6	s_C_P25VME_X003_d03	s_C_XT37HY_P003_d01	P-0037982-T01-IM6	P-0039320-T01-IM6	s_C_2KK39D_P003_d01	P-0054252-T01-IM6	P-0034334-T02-IM7	P-0009343-T01-IM5	s_C_M2FL7U_P002_d01	s_C_AXH9L5_P002_d01	P-0001811-T01-IM3	P-0019513-T01-IM6	P-0013202-T01-IM5	P-0003297-T01-IM5	s_C_F8TV71_P004_d01	s_C_6NUC1Y_P003_d02	s_C_W0VA7R_P002_d01	P-0084458-T01-IM7	P-0068155-T02-IM7	P-0008322-T01-IM5	P-0045912-T02-IM6	P-0034334-T01-IM6	s_C_JAEWU9_X001_d01	s_C_J7P8V8_P003_d01	s_C_1CTKX4_X001_d01	P-0031283-T01-IM6	s_C_9HH8K5_P003_d02	P-0019533-T01-IM6	s_C_JMLR60_P004_d03	P-0021693-T01-IM6	P-0022184-T01-IM6	s_C_45KUWM_P002_d01	P-0048102-T02-IM6	s_C_TRMRMA_P003_d02	P-0031827-T06-IM7	P-0010177-T01-IM5	s_C_86H8JC_X004_d04	s_C_49XY2L_X001_d	P-0032170-T01-IM6	P-0002117-T01-IM3	s_C_59HVFF_P002_d01	P-0020408-T01-IM6	s_C_9A9P95_P004_d03	P-0055607-T02-IM6	P-0068155-T05-IM7	s_C_7FAELW_P005_d04	P-0057391-T02-IM6	P-0029971-T01-IM6	P-0022509-T01-IM6	P-0036106-T01-IM6	P-0038772-T01-IM6	P-0024907-T01-IM6	s_C_5U942R_P002_d01	P-0021191-T01-IM6	s_C_A2TC5X_P003_d02	P-0059257-T02-IM7	s_C_5UT56Y_P002_d01	P-0030808-T01-IM6	s_C_7RX76D_P002_d01	P-0016280-T01-IM6	s_C_KUDP1C_P002_d01	P-0012778-T02-IM6	s_C_7P9U2X_M003_d01	P-0087669-T03-IM7	s_C_3NJUR7_P002_d01	s_C_A7KTKC_P004_d02	s_C_9F0RMP_M005_d02	P-0029750-T01-IM6	P-0031827-T02-IM6	P-0018280-T01-IM6	P-0022509-T03-IM7	s_C_RPRH27_X001_d01	s_C_8RRAT3_P001_d01	P-0002024-T01-IM3	s_C_R0HF7T_P003_d02	P-0027860-T01-IM6	s_C_M584V5_P002_d01	s_C_7P9U2X_M004_d02	P-0078722-T02-IM7	P-0040600-T01-IM6
diff --git a/public/alk_msk_2026/case_lists/cases_cnaseq.txt b/public/alk_msk_2026/case_lists/cases_cnaseq.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: alk_msk_2026
+stable_id: alk_msk_2026_cnaseq
+case_list_name: Samples with mutation and CNA data
+case_list_description: Samples with mutation and CNA data (90 samples)
+case_list_category: all_cases_with_mutation_and_cna_data
+case_list_ids: s_C_DD273P_P002_d01	P-0011018-T01-IM5	s_C_V2PTM9_P003_d02	P-0023000-T01-IM6	s_C_C69YRJ_X001_d01	P-0031827-T03-IM6	P-0002217-T02-IM3	P-0022184-T04-IM6	P-0040732-T02-IM6	P-0016960-T01-IM6	s_C_P25VME_X003_d03	s_C_XT37HY_P003_d01	P-0037982-T01-IM6	P-0039320-T01-IM6	s_C_2KK39D_P003_d01	P-0054252-T01-IM6	P-0034334-T02-IM7	P-0009343-T01-IM5	s_C_M2FL7U_P002_d01	s_C_AXH9L5_P002_d01	P-0001811-T01-IM3	P-0019513-T01-IM6	P-0013202-T01-IM5	P-0003297-T01-IM5	s_C_F8TV71_P004_d01	s_C_6NUC1Y_P003_d02	s_C_W0VA7R_P002_d01	P-0084458-T01-IM7	P-0068155-T02-IM7	P-0008322-T01-IM5	P-0045912-T02-IM6	P-0034334-T01-IM6	s_C_JAEWU9_X001_d01	s_C_J7P8V8_P003_d01	s_C_1CTKX4_X001_d01	P-0031283-T01-IM6	s_C_9HH8K5_P003_d02	P-0019533-T01-IM6	s_C_JMLR60_P004_d03	P-0021693-T01-IM6	P-0022184-T01-IM6	s_C_45KUWM_P002_d01	P-0048102-T02-IM6	P-0031827-T06-IM7	s_C_TRMRMA_P003_d02	P-0010177-T01-IM5	s_C_86H8JC_X004_d04	s_C_49XY2L_X001_d	P-0032170-T01-IM6	P-0002117-T01-IM3	s_C_59HVFF_P002_d01	P-0020408-T01-IM6	s_C_9A9P95_P004_d03	P-0055607-T02-IM6	P-0068155-T05-IM7	s_C_7FAELW_P005_d04	P-0057391-T02-IM6	P-0029971-T01-IM6	P-0022509-T01-IM6	P-0038772-T01-IM6	P-0036106-T01-IM6	P-0024907-T01-IM6	s_C_5U942R_P002_d01	P-0021191-T01-IM6	s_C_A2TC5X_P003_d02	P-0059257-T02-IM7	s_C_5UT56Y_P002_d01	P-0030808-T01-IM6	s_C_7RX76D_P002_d01	P-0016280-T01-IM6	s_C_KUDP1C_P002_d01	P-0012778-T02-IM6	s_C_7P9U2X_M003_d01	P-0087669-T03-IM7	s_C_3NJUR7_P002_d01	s_C_A7KTKC_P004_d02	s_C_9F0RMP_M005_d02	P-0029750-T01-IM6	P-0031827-T02-IM6	P-0018280-T01-IM6	P-0022509-T03-IM7	s_C_RPRH27_X001_d01	s_C_8RRAT3_P001_d01	P-0002024-T01-IM3	s_C_R0HF7T_P003_d02	P-0027860-T01-IM6	s_C_M584V5_P002_d01	s_C_7P9U2X_M004_d02	P-0078722-T02-IM7	P-0040600-T01-IM6
diff --git a/public/alk_msk_2026/case_lists/cases_sequenced.txt b/public/alk_msk_2026/case_lists/cases_sequenced.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: alk_msk_2026
+stable_id: alk_msk_2026_sequenced
+case_list_name: Samples with mutation data
+case_list_description: Samples with mutation data (90 samples)
+case_list_category: all_cases_with_mutation_data
+case_list_ids: s_C_DD273P_P002_d01	P-0011018-T01-IM5	s_C_V2PTM9_P003_d02	P-0023000-T01-IM6	s_C_C69YRJ_X001_d01	P-0031827-T03-IM6	P-0002217-T02-IM3	P-0022184-T04-IM6	P-0040732-T02-IM6	P-0016960-T01-IM6	s_C_P25VME_X003_d03	s_C_XT37HY_P003_d01	P-0037982-T01-IM6	P-0039320-T01-IM6	s_C_2KK39D_P003_d01	P-0054252-T01-IM6	P-0034334-T02-IM7	P-0009343-T01-IM5	s_C_M2FL7U_P002_d01	s_C_AXH9L5_P002_d01	P-0001811-T01-IM3	P-0019513-T01-IM6	P-0013202-T01-IM5	P-0003297-T01-IM5	s_C_F8TV71_P004_d01	s_C_6NUC1Y_P003_d02	s_C_W0VA7R_P002_d01	P-0084458-T01-IM7	P-0068155-T02-IM7	P-0008322-T01-IM5	P-0045912-T02-IM6	P-0034334-T01-IM6	s_C_JAEWU9_X001_d01	s_C_J7P8V8_P003_d01	s_C_1CTKX4_X001_d01	P-0031283-T01-IM6	s_C_9HH8K5_P003_d02	P-0019533-T01-IM6	s_C_JMLR60_P004_d03	P-0021693-T01-IM6	P-0022184-T01-IM6	s_C_45KUWM_P002_d01	P-0048102-T02-IM6	P-0031827-T06-IM7	s_C_TRMRMA_P003_d02	P-0010177-T01-IM5	s_C_86H8JC_X004_d04	s_C_49XY2L_X001_d	P-0032170-T01-IM6	P-0002117-T01-IM3	s_C_59HVFF_P002_d01	P-0020408-T01-IM6	s_C_9A9P95_P004_d03	P-0055607-T02-IM6	P-0068155-T05-IM7	s_C_7FAELW_P005_d04	P-0057391-T02-IM6	P-0029971-T01-IM6	P-0022509-T01-IM6	P-0038772-T01-IM6	P-0036106-T01-IM6	P-0024907-T01-IM6	s_C_5U942R_P002_d01	P-0021191-T01-IM6	s_C_A2TC5X_P003_d02	P-0059257-T02-IM7	s_C_5UT56Y_P002_d01	P-0030808-T01-IM6	s_C_7RX76D_P002_d01	P-0016280-T01-IM6	s_C_KUDP1C_P002_d01	P-0012778-T02-IM6	s_C_7P9U2X_M003_d01	P-0087669-T03-IM7	s_C_3NJUR7_P002_d01	s_C_A7KTKC_P004_d02	s_C_9F0RMP_M005_d02	P-0029750-T01-IM6	P-0031827-T02-IM6	P-0018280-T01-IM6	P-0022509-T03-IM7	s_C_RPRH27_X001_d01	s_C_8RRAT3_P001_d01	P-0002024-T01-IM3	s_C_R0HF7T_P003_d02	P-0027860-T01-IM6	s_C_M584V5_P002_d01	s_C_7P9U2X_M004_d02	P-0078722-T02-IM7	P-0040600-T01-IM6
diff --git a/public/alk_msk_2026/case_lists/cases_sv.txt b/public/alk_msk_2026/case_lists/cases_sv.txt
@@ -0,0 +1,6 @@
+cancer_study_identifier: alk_msk_2026
+stable_id: alk_msk_2026_sv
+case_list_name: Samples with SV data
+case_list_description: All samples with SV data (90 samples)
+case_list_category: all_cases_with_sv_data
+case_list_ids: s_C_DD273P_P002_d01	P-0011018-T01-IM5	s_C_V2PTM9_P003_d02	P-0023000-T01-IM6	s_C_C69YRJ_X001_d01	P-0002217-T02-IM3	P-0031827-T03-IM6	P-0022184-T04-IM6	P-0040732-T02-IM6	P-0016960-T01-IM6	s_C_P25VME_X003_d03	s_C_XT37HY_P003_d01	P-0037982-T01-IM6	P-0039320-T01-IM6	s_C_2KK39D_P003_d01	P-0054252-T01-IM6	P-0009343-T01-IM5	P-0034334-T02-IM7	s_C_M2FL7U_P002_d01	s_C_AXH9L5_P002_d01	P-0001811-T01-IM3	P-0019513-T01-IM6	P-0013202-T01-IM5	P-0003297-T01-IM5	s_C_F8TV71_P004_d01	s_C_W0VA7R_P002_d01	s_C_6NUC1Y_P003_d02	P-0084458-T01-IM7	P-0040600-T01-IM6	P-0068155-T02-IM7	P-0008322-T01-IM5	P-0045912-T02-IM6	P-0034334-T01-IM6	s_C_JAEWU9_X001_d01	s_C_J7P8V8_P003_d01	s_C_1CTKX4_X001_d01	s_C_9HH8K5_P003_d02	P-0019533-T01-IM6	P-0031283-T01-IM6	s_C_JMLR60_P004_d03	P-0021693-T01-IM6	P-0022184-T01-IM6	s_C_45KUWM_P002_d01	P-0048102-T02-IM6	P-0031827-T06-IM7	s_C_TRMRMA_P003_d02	P-0010177-T01-IM5	s_C_86H8JC_X004_d04	s_C_49XY2L_X001_d	P-0032170-T01-IM6	P-0002117-T01-IM3	s_C_59HVFF_P002_d01	P-0020408-T01-IM6	s_C_9A9P95_P004_d03	P-0055607-T02-IM6	P-0068155-T05-IM7	s_C_7FAELW_P005_d04	P-0057391-T02-IM6	P-0029971-T01-IM6	P-0022509-T01-IM6	P-0036106-T01-IM6	P-0024907-T01-IM6	s_C_5U942R_P002_d01	P-0021191-T01-IM6	P-0059257-T02-IM7	s_C_A2TC5X_P003_d02	P-0030808-T01-IM6	s_C_5UT56Y_P002_d01	s_C_7RX76D_P002_d01	P-0016280-T01-IM6	s_C_KUDP1C_P002_d01	P-0012778-T02-IM6	s_C_7P9U2X_M003_d01	P-0087669-T03-IM7	s_C_3NJUR7_P002_d01	s_C_A7KTKC_P004_d02	s_C_9F0RMP_M005_d02	P-0029750-T01-IM6	P-0031827-T02-IM6	P-0018280-T01-IM6	P-0022509-T03-IM7	s_C_RPRH27_X001_d01	s_C_8RRAT3_P001_d01	P-0002024-T01-IM3	s_C_R0HF7T_P003_d02	P-0027860-T01-IM6	s_C_M584V5_P002_d01	s_C_7P9U2X_M004_d02	P-0078722-T02-IM7	P-0038772-T01-IM6
diff --git a/public/alk_msk_2026/data_CNA.ascna.txt b/public/alk_msk_2026/data_CNA.ascna.txt
diff --git a/public/alk_msk_2026/data_clinical_patient.txt b/public/alk_msk_2026/data_clinical_patient.txt
diff --git a/public/alk_msk_2026/data_clinical_sample.txt b/public/alk_msk_2026/data_clinical_sample.txt
diff --git a/public/alk_msk_2026/data_cna.txt b/public/alk_msk_2026/data_cna.txt
diff --git a/public/alk_msk_2026/data_cna_hg19.seg b/public/alk_msk_2026/data_cna_hg19.seg
diff --git a/public/alk_msk_2026/data_fusions.txt b/public/alk_msk_2026/data_fusions.txt
diff --git a/public/alk_msk_2026/data_gene_panel_matrix.txt b/public/alk_msk_2026/data_gene_panel_matrix.txt
diff --git a/public/alk_msk_2026/data_mutations.txt b/public/alk_msk_2026/data_mutations.txt
diff --git a/public/alk_msk_2026/data_sv.txt b/public/alk_msk_2026/data_sv.txt
diff --git a/public/alk_msk_2026/data_timeline_bmi.txt b/public/alk_msk_2026/data_timeline_bmi.txt
diff --git a/public/alk_msk_2026/data_timeline_ca_125_labs.txt b/public/alk_msk_2026/data_timeline_ca_125_labs.txt
diff --git a/public/alk_msk_2026/data_timeline_ca_15_3_labs.txt b/public/alk_msk_2026/data_timeline_ca_15_3_labs.txt
diff --git a/public/alk_msk_2026/data_timeline_cancer_presence.txt b/public/alk_msk_2026/data_timeline_cancer_presence.txt
diff --git a/public/alk_msk_2026/data_timeline_cea_labs.txt b/public/alk_msk_2026/data_timeline_cea_labs.txt
diff --git a/public/alk_msk_2026/data_timeline_diagnosis.txt b/public/alk_msk_2026/data_timeline_diagnosis.txt
diff --git a/public/alk_msk_2026/data_timeline_ecog_kps.txt b/public/alk_msk_2026/data_timeline_ecog_kps.txt
diff --git a/public/alk_msk_2026/data_timeline_follow_up.txt b/public/alk_msk_2026/data_timeline_follow_up.txt
diff --git a/public/alk_msk_2026/data_timeline_pdl1.txt b/public/alk_msk_2026/data_timeline_pdl1.txt
diff --git a/public/alk_msk_2026/data_timeline_prior_meds.txt b/public/alk_msk_2026/data_timeline_prior_meds.txt
diff --git a/public/alk_msk_2026/data_timeline_progression.txt b/public/alk_msk_2026/data_timeline_progression.txt
diff --git a/public/alk_msk_2026/data_timeline_psa_labs.txt b/public/alk_msk_2026/data_timeline_psa_labs.txt
diff --git a/public/alk_msk_2026/data_timeline_radiation.txt b/public/alk_msk_2026/data_timeline_radiation.txt
diff --git a/public/alk_msk_2026/data_timeline_specimen.txt b/public/alk_msk_2026/data_timeline_specimen.txt
diff --git a/public/alk_msk_2026/data_timeline_specimen_surgery.txt b/public/alk_msk_2026/data_timeline_specimen_surgery.txt
diff --git a/public/alk_msk_2026/data_timeline_surgery.txt b/public/alk_msk_2026/data_timeline_surgery.txt
diff --git a/public/alk_msk_2026/data_timeline_treatment.txt b/public/alk_msk_2026/data_timeline_treatment.txt
diff --git a/public/alk_msk_2026/data_timeline_tsh_labs.txt b/public/alk_msk_2026/data_timeline_tsh_labs.txt
diff --git a/public/alk_msk_2026/data_timeline_tumor_sites.txt b/public/alk_msk_2026/data_timeline_tumor_sites.txt
diff --git a/public/alk_msk_2026/meta_clinical_patient.txt b/public/alk_msk_2026/meta_clinical_patient.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: PATIENT_ATTRIBUTES
+data_filename: data_clinical_patient.txt
diff --git a/public/alk_msk_2026/meta_clinical_sample.txt b/public/alk_msk_2026/meta_clinical_sample.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: SAMPLE_ATTRIBUTES
+data_filename: data_clinical_sample.txt
diff --git a/public/alk_msk_2026/meta_cna.txt b/public/alk_msk_2026/meta_cna.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+stable_id: cna
+show_profile_in_analysis_tab: true
+profile_name: Copy Number Alterations (MSK-IMPACT)
+profile_description: Copy number alterations from targeted sequencing via MK-IMPACT on Illumina HiSeq sequencers.
+datatype: DISCRETE
+data_filename: data_cna.txt
diff --git a/public/alk_msk_2026/meta_cna_hg19_seg.txt b/public/alk_msk_2026/meta_cna_hg19_seg.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: alk_msk_2026
+data_filename: data_cna_hg19.seg
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: SEG
+show_profile_in_analysis_tab: FALSE
+profile_name: Segment data values
+description: Somatic CNA data (copy number ratio from tumor samples minus ratio from matched normals) from TCGA.
+reference_genome_id: hg19
diff --git a/public/alk_msk_2026/meta_fusions.txt b/public/alk_msk_2026/meta_fusions.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: alk_msk_2026
+data_filename: data_fusions.txt
+datatype: FUSION
+genetic_alteration_type: FUSION
+profile_description: Fusion data
+profile_name: Fusions
+show_profile_in_analysis_tab: true
+stable_id: fusion
diff --git a/public/alk_msk_2026/meta_gene_panel_matrix.txt b/public/alk_msk_2026/meta_gene_panel_matrix.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+data_filename: data_gene_panel_matrix.txt
+genetic_alteration_type: GENE_PANEL_MATRIX
+datatype: GENE_PANEL_MATRIX
diff --git a/public/alk_msk_2026/meta_mutations.txt b/public/alk_msk_2026/meta_mutations.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: alk_msk_2026
+stable_id: mutations
+profile_name: Mutations (MSK-IMPACT)
+profile_description: Targeted sequencing of various tumor types via MSK-IMPACT on Illumina HiSeq sequencers.
+genetic_alteration_type: MUTATION_EXTENDED
+datatype: MAF
+data_filename: data_mutations.txt
+show_profile_in_analysis_tab: true
diff --git a/public/alk_msk_2026/meta_study.txt b/public/alk_msk_2026/meta_study.txt
@@ -0,0 +1,5 @@
+type_of_cancer: nsclc
+cancer_study_identifier: alk_msk_2026
+name: Non-Small Cell Lung Cancer (MSK, 2026)
+short_name: MSK-IMPACT Clinical Sequencing Cohort
+description: Targeted sequencing of 90 non-small cell lung cancer cases and their matched normals via MSK-IMPACT to study acquired resistance to ALK tyrosine kinase inhibitors (TKIs) in a cohort of MSK ALK-fusion lung tumors. 
diff --git a/public/alk_msk_2026/meta_sv.txt b/public/alk_msk_2026/meta_sv.txt
@@ -0,0 +1,8 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: STRUCTURAL_VARIANT
+datatype: SV
+stable_id: structural_variants
+profile_name: Structural Variants
+profile_description: Structural Variants
+show_profile_in_analysis_tab: true
+data_filename: data_sv.txt
diff --git a/public/alk_msk_2026/meta_timeline_bmi.txt b/public/alk_msk_2026/meta_timeline_bmi.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_bmi.txt
diff --git a/public/alk_msk_2026/meta_timeline_ca_125_labs.txt b/public/alk_msk_2026/meta_timeline_ca_125_labs.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_ca_125_labs.txt
diff --git a/public/alk_msk_2026/meta_timeline_ca_15_3_labs.txt b/public/alk_msk_2026/meta_timeline_ca_15_3_labs.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_ca_15_3_labs.txt
diff --git a/public/alk_msk_2026/meta_timeline_cancer_presence.txt b/public/alk_msk_2026/meta_timeline_cancer_presence.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_cancer_presence.txt
diff --git a/public/alk_msk_2026/meta_timeline_cea_labs.txt b/public/alk_msk_2026/meta_timeline_cea_labs.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_cea_labs.txt
diff --git a/public/alk_msk_2026/meta_timeline_diagnosis.txt b/public/alk_msk_2026/meta_timeline_diagnosis.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_diagnosis.txt
diff --git a/public/alk_msk_2026/meta_timeline_ecog_kps.txt b/public/alk_msk_2026/meta_timeline_ecog_kps.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_ecog_kps.txt
diff --git a/public/alk_msk_2026/meta_timeline_follow_up.txt b/public/alk_msk_2026/meta_timeline_follow_up.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_follow_up.txt
diff --git a/public/alk_msk_2026/meta_timeline_pdl1.txt b/public/alk_msk_2026/meta_timeline_pdl1.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_pdl1.txt
diff --git a/public/alk_msk_2026/meta_timeline_prior_meds.txt b/public/alk_msk_2026/meta_timeline_prior_meds.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_prior_meds.txt
diff --git a/public/alk_msk_2026/meta_timeline_progression.txt b/public/alk_msk_2026/meta_timeline_progression.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_progression.txt
diff --git a/public/alk_msk_2026/meta_timeline_psa_labs.txt b/public/alk_msk_2026/meta_timeline_psa_labs.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_psa_labs.txt
diff --git a/public/alk_msk_2026/meta_timeline_radiation.txt b/public/alk_msk_2026/meta_timeline_radiation.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_radiation.txt
diff --git a/public/alk_msk_2026/meta_timeline_specimen.txt b/public/alk_msk_2026/meta_timeline_specimen.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_specimen.txt
diff --git a/public/alk_msk_2026/meta_timeline_specimen_surgery.txt b/public/alk_msk_2026/meta_timeline_specimen_surgery.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_specimen_surgery.txt
diff --git a/public/alk_msk_2026/meta_timeline_surgery.txt b/public/alk_msk_2026/meta_timeline_surgery.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_surgery.txt
diff --git a/public/alk_msk_2026/meta_timeline_treatment.txt b/public/alk_msk_2026/meta_timeline_treatment.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_treatment.txt
diff --git a/public/alk_msk_2026/meta_timeline_tsh_labs.txt b/public/alk_msk_2026/meta_timeline_tsh_labs.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_tsh_labs.txt
diff --git a/public/alk_msk_2026/meta_timeline_tumor_sites.txt b/public/alk_msk_2026/meta_timeline_tumor_sites.txt
@@ -0,0 +1,4 @@
+cancer_study_identifier: alk_msk_2026
+genetic_alteration_type: CLINICAL
+datatype: TIMELINE
+data_filename: data_timeline_tumor_sites.txt