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update TCGA Pancan imaging links to OHIF v3#2326

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inodb merged 2 commits into
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update_tcga_images
Jun 1, 2026
Merged

update TCGA Pancan imaging links to OHIF v3#2326
inodb merged 2 commits into
masterfrom
update_tcga_images

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@rmadupuri

@rmadupuri rmadupuri commented May 21, 2026

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Update to PR: #2260 switching from OHIF viewer version 2 -> 3

Testing Hub portal preview:

  1. ACC pancan : https://hub.cbioportal.org/study/summary?id=acc_tcga_pan_can_atlas_2018
  2. BLCA pancan : https://hub.cbioportal.org/study/summary?id=blca_tcga_pan_can_atlas_2018
  3. BRCA pancan : https://hub.cbioportal.org/study/summary?id=brca_tcga_pan_can_atlas_2018

Available Imaging Modalities:

Code Modality Viewer Resource ID Resource Tab Name in Portal
CR Computed Radiography OHIF IDC_OHIF_CR Computed Radiography
CT Computed Tomography OHIF IDC_OHIF_CT Computed Tomography
DX Digital Radiography OHIF IDC_OHIF_DX Digital Radiography
MG Mammography OHIF IDC_OHIF_MG Mammography
MR Magnetic Resonance OHIF IDC_OHIF_MR Magnetic Resonance
NM Nuclear Medicine OHIF IDC_OHIF_NM Nuclear Medicine
PT Positron Emission Tomography OHIF IDC_OHIF_PT Positron Emission Tomography
SM Slide Microscopy (H&E) SLIM IDC_SLIM Slide Microscopy

@inodb

inodb commented May 23, 2026

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Preview

Imported public/acc_tcga_pan_can_atlas_2018 from this PR into hub.cbioportal.org as a spot check (only 1 of the 32 studies touched here — importing all 32 would take hours).

Patient view: https://hub.cbioportal.org/patient?studyId=acc_tcga_pan_can_atlas_2018&caseId=TCGA-OR-A5J1

The Resources tab should show the new IDC SLIM viewer link.

@inodb

inodb commented Jun 1, 2026

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These were import timings for the 3 studies if helpful:
image

Merging to address a user reported issue: https://discourse.canceridc.dev/t/unable-to-view-idc-study-via-a-cbioportal-viewer-link/784/8. Can follow up with more fixes later

@inodb inodb merged commit ec160ea into master Jun 1, 2026
2 of 3 checks passed
@rmadupuri rmadupuri deleted the update_tcga_images branch June 1, 2026 15:33
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