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bluenote-1577 edited this page Aug 12, 2025 · 12 revisions

Welcome to the skani wiki!

See the sidebar for tutorials and skani usage information.

Wiki pages Pages 8

Home
Pre‐sketched databases
skani advanced usage guide
skani basic usage guide
skani cookbook
Tutorial: classifying entire assemblies (MAGs or contigs) against 85,000 genomes in under 2 minutes
Tutorial: setting up the GTDB genome database to search against
Tutorial: strain and species level clustering of MAGs with skani triangle

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