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In BEAUti v10.5.0 Taxon Set options not passing to xml file

Status: Open.

#1266 In beast-dev/beast-mcmc;

· KWollenbergPhylo opened on Aug 12, 2026

Importing taxa files to beauti locks 'Trees' tab preventing editing

Status: Open.

#1263 In beast-dev/beast-mcmc;

· matbeale opened on Jul 6, 2026

Poisson likelihood computed outside log-space causes numerical underflow (Thorney strict clock)

Status: Open.

#1249 In beast-dev/beast-mcmc;

· Jujuke opened on Jan 20, 2026

Setting burnin in LogCombiner v10.5.0

Status: Open.

#1247 In beast-dev/beast-mcmc;

· MarliesJFrancine opened on Dec 15, 2025

Starting tree constraints without monophyly constraints on taxa partitions

beauti

enhancement

Status: Open.

#1246 In beast-dev/beast-mcmc;

· plemey opened on Nov 12, 2025

·  

v10.6.0

handling multiple partitions with codonPartitionedRobustCounting & dNdSLogger

beauti

Status: Open.

Feature

#1241 In beast-dev/beast-mcmc;

· plemey opened on Sep 5, 2025

Branch 'beauti_subtree_prior' - can't create local clock and subtree prior

beauti

bug

Status: Open.

Bug

#1231 In beast-dev/beast-mcmc;

· rambaut opened on May 15, 2025

·  

v10.6.0

Fix checkpointing for relaxed clock models

bug

Status: Open.

Bug

#1225 In beast-dev/beast-mcmc;

· GuyBaele opened on Apr 21, 2025

Issue Thorney-beast with relax clock model

Status: Open.

#1217 In beast-dev/beast-mcmc;

· AlbertoA3 opened on Feb 4, 2025

HMC Clock Model doesn't produce any mention or citation

enhancement

Status: Open.

#1190 In beast-dev/beast-mcmc;

· rambaut opened on Jul 12, 2024

·  

v10.6.0

Put more information in the operator log

enhancement

Status: Open.

#1187 In beast-dev/beast-mcmc;

· rambaut opened on Jun 16, 2024

·  

beast X

Idea: Get BEAUti to load an operator log and use it to weight the operators

enhancement

Status: Open.

#1186 In beast-dev/beast-mcmc;

· rambaut opened on Jun 16, 2024

·  

beast X