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[BUG] Paired MSA truncation ranks rows with an int64 product that silently overflows
bugSomething isn't workingSomething isn't workingdata preprocessingRelating to the preprocessing of queries and datasetsRelating to the preprocessing of queries and datasetsStatus: Open.#372 In aqlaboratory/openfold-3;[ENH] /tmp/of3-of-$USER causing problems with cluster jobs
enhancementNew feature or requestNew feature or requestStatus: Open.#342 In aqlaboratory/openfold-3;[BUG] Flaky test
bugSomething isn't workingSomething isn't workingStatus: Open.#334 In aqlaboratory/openfold-3;Allow residue/component identifier specification for SMILES input.
enhancementNew feature or requestNew feature or requestStatus: Open.#323 In aqlaboratory/openfold-3;Requesting per-atom pLDDT (and optionally PAE / resolved-prediction) for the RNA distillation set
enhancementNew feature or requestNew feature or requestscienceDiscussions about scientific aspects of OpenFold3Discussions about scientific aspects of OpenFold3Status: Open.#316 In aqlaboratory/openfold-3;[MASTER ISSUE] dataset building toward finetuning cache
bugSomething isn't workingSomething isn't workingStatus: Open.#278 In aqlaboratory/openfold-3;[BUG]Possible mismatch in nucleotide PAE frame atom order
bugSomething isn't workingSomething isn't workingquestionFurther information is requestedFurther information is requestedscienceDiscussions about scientific aspects of OpenFold3Discussions about scientific aspects of OpenFold3Status: Open.#247 In aqlaboratory/openfold-3;CIF Direct templates have apparent negligible influence on predicted conformations/steering
bugSomething isn't workingSomething isn't workingenhancementNew feature or requestNew feature or requestscienceDiscussions about scientific aspects of OpenFold3Discussions about scientific aspects of OpenFold3Status: Open.#235 In aqlaboratory/openfold-3;Inference OOM from
get_token_frame_atomsbugSomething isn't workingSomething isn't workingenhancementNew feature or requestNew feature or requestinferenceRelating to the inference pipelineRelating to the inference pipelineStatus: Open.#225 In aqlaboratory/openfold-3;Support covalently bound ligands in inference
enhancementNew feature or requestNew feature or requestStatus: Open.#219 In aqlaboratory/openfold-3;Restoring chunking for batch_size > 1 with optimized kernels
enhancementNew feature or requestNew feature or requestStatus: Open.#206 In aqlaboratory/openfold-3;[QUESTION] msas uncompatible format
bugSomething isn't workingSomething isn't workingquestionFurther information is requestedFurther information is requestedStatus: Open.#188 In aqlaboratory/openfold-3;