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score_mutant stuck in the "Quantize the structure" phase

Status: Open.

#16 In ai4protein/ProSST;

· ldx022 opened on Oct 30, 2025

Possible bug in DisentangledSelfAttention?

Status: Open.

#15 In ai4protein/ProSST;

· rcalef opened on Sep 3, 2025

SSTPredictor stopped when I use it to generate embedding for the structures from pdb file.

Status: Open.

#14 In ai4protein/ProSST;

· XudongZhang-ny opened on Jul 2, 2025

PdbQuantizer stuck

Status: Open.

#13 In ai4protein/ProSST;

· j3rk0 opened on Apr 7, 2025

Discrepancy in structure quantizer outputs and request for original PDB files used in the proteingym_benchmark.zip

Status: Open.

#12 In ai4protein/ProSST;

· yangguang8112 opened on Mar 17, 2025

Error in score_mutant.ipynb

Status: Open.

#11 In ai4protein/ProSST;

· MichaelAbel1 opened on Mar 4, 2025

PdbQuantizer is too slow

Status: Open.

#9 In ai4protein/ProSST;

· yourh opened on Jan 19, 2025

Extract embeddings

Status: Open.

#8 In ai4protein/ProSST;

· Zmmhd opened on Dec 31, 2024

Issues when create environment

Status: Open.

#5 In ai4protein/ProSST;

· U12458 opened on Oct 26, 2024

Thank you for the work you have done. This question pertains to downstream tasks.

Status: Open.

#4 In ai4protein/ProSST;

· lllastronaut opened on Sep 5, 2024

Structural tokenizer (PdbQuantizer) is too slow at processing long proteins

Status: Open.

#3 In ai4protein/ProSST;

· KatarinaYuan opened on Aug 15, 2024

Is the MLP and training script available in the future?

Status: Open.

#2 In ai4protein/ProSST;

· JiahaoZhang-Public opened on Jun 21, 2024