v1.0.1

What's Changed

Bug Fixes

• Fixed Y-axis coordinate flip in denoiser — Particle coordinates are no longer mirrored in the Y-axis when using partinet denoise. Users on v1.0.0 should enable Flip in y in CryoSPARC when extracting particles picked on v1.0.0 denoised micrographs. This is not required in v1.0.1+.
• Added RELION-compatible STAR file output — partinet star now supports --relion, --relion-project-dir, and --mrc-prefix flags to generate a RELION pick.star manifest and per-micrograph coordinate STAR files under <relion_project>/partinet/. CryoSPARC output remains the default.
• Fixed Windows line endings (CRLF) in STAR output — STAR files now always use Unix line endings (LF), resolving import failures in RELION on files generated on Windows.
• Non-denoised detection input — the detect stage can now directly accept single-slice MRC files

Documentation

• Updated all stage docs and README to reflect RELION output support
• Added v1.0.0 compatibility note for the Y-axis flip workaround
• Corrected various typos and style choices