CMOR 3.6.0

Features

• Added the option --hide-progress to PrePARE to remove the number of files completed while processing files.
• Added the option --no-text-color to PrePARE to remove the color code from the terminal output.
• Added the option --version to PrePARE to output the version of CMOR/PrePARE in use.

Changes

• CMOR now supports Python 3.8.
• Changed Control Vocabulary to Controlled Vocabulary.
• Improved error messages for supported data types in pywrapper.py.
• Removed gfortran 4.8.5 requirement for OSX.
• CMOR will now allow axis values to be within 1.e-6 fractional error for valid_min and valid_max.
• cmor_CV_checkSourceID will throw an error if source is not found in a source_id section of the CV.
• In the function cmor_CV_checkParentExpID, if parent_experiment_id is "" or not found in the variable file, then it will be set to "no parent" if that is the valid value for parent_experiment_id in the CV.
• When parent_experiment_id is a value other than "no parent" in the function cmor_CV_checkParentExpID, it will check the attributes parent_activity_id, branch_method, branch_time_in_child, branch_time_in_parent, parent_time_units, parent_variant_label, parent_source_id, and parent_mip_era, and only return an error after going through all of them.

Bugfixes

• Improved how comments in the cell_methods attribute are handled.
• Fixed error message for false_northing in cmor_set_grid_attribute
• Fixed issue with PrePARE not counting errors for attribute errors.
• Fixed errors when processing the nwdFracLut variable in the Emon table.
• PrePARE will now check if external_variables exists when values are present in cell_measures.
• PrePARE will now give an error if the activity_id is wrong.

Closed Issues

• Python 3.8 support
• Change "Control Vocabulary" to "Controlled Vocabulary"
• in PrePARE, logfile-friendly output format
• Handling comments in "cell_methods" in PrePARE
• Copy-&-paste error in error message on false_northing and projection_y_coordinate in cmor_grids.c
  
• Error message mis-match
• Recursive directory output issue / error vs warning
• Remove fortran compiler 4.8.5 requirement for OSX
• Error that doesn't cause failure when producing mrsos for Lmon
• nwdFracLut in Emon
• Unclear why Files SKIPPED
• Wrong activity_id warning (should be error?), etc..
• add --version command line argument to PrePARE
• Error handling in cmor_CV.c

GitHub

CMOR 3.5.0

Changes

• CMOR now supports Python 3.6 and 3.7.
• PrePARE will stop if CMIP6_coordinate.json, CMIP6_formula_terms.json, and CMIP6_CV.json are missing from the table directory.
• Changed missing value replacement history message to include "corresponding data".
• The UUID library ossuuid has been replaced with libuuid
• CMOR will now use the json-c library installed from conda-forge instead of building its own library.
• In the Python API, CMOR will throw an error if the number of time steps being passed to cmor.write is less than ntimes_passed.
• If the number of timesteps written is less than the length of the time axis, CMOR will give a warning when closing.
• cdms2 has been replaced with Netcdf4 for use in PrePARE.

Bugfixes

• Fixed bug in PrePARE where it crashes when it does not find the _FillValue attribute in a file.
• Fixed error caused by variables having both a singleton dimension and a generic level.
• Fixed bugs in PrePARE where it was not processing the attribute cell_measures correctly.
• Fixed bug caused by cmor.write in the Python API when the number of time steps passed is less than the ntimes_passed argument.
• Fixed bug when handling the olevhalf dimension.
• Fixed error caused by variables having multiple singleton dimensions.
• Fixed bug when using CMOR in Append mode for instantaneous variables.
• Fixed bug caused by multiple instances of CMOR running a file permissions test by writing a test file. Each test file will now have the instance's PID in the file name.
• Fixed bug where the frequency of the variable used in the last call to cmor_write is applied to the output file name of all variables when calling cmor_close_variable or cmor_close.

Closed Issues

• Update cmor3 for python3
• PrePARE missing _FillValue exit
• cmor should stop if coordinates table is not present
• singleton and generic level
• PrePARE cell_measures changed in 3.4.0
• cmor.write segfault related to timesteps
• Question about handling of missing values in cmor_variable.c
• Bug in treating olevhalf
• switch from ossuuid to libuuid
• Two or more singleton dimensions (bs550aer)
• vendorizing json-c
• Append mode for instantaneous variables
• not passing enough times as data passes
• not writing enough times should issue a warning at exit
• Builds breaking from cdms2 issue related to libnetcdf
• Falsely alerting missing write permissions cmor.c#L1683
• CMOR using incorrect frequencies for variables when closing programs with multiple frequencies.

GitHub

CMOR 3.4.0

Changes

• Fixed missing out_names_tests.json in PrePARE
• More robust comparison of missing_value and _FillValue between NetCDF files and CMIP6 tables in PrePARE.
• Variable name for time bounds is extracted from the NetCDF file in PrePARE.
• Time values and their bounds must be passed through cmor_write when CMOR is in append mode. Otherwise, an error is thrown.

Closed Issues

• PrePARE issues
• Error handling with CVs
• Error in PrePARE check of parent
• Python error handling no longer works on master
• branch_time_in_parent global attribute
• PrePARE hangs with Pool
• PrePARE aborts if source_type is incorrect

GitHub

CMOR 3.3.3

CMOR 3.3.3

CMOR 3.3.2

CMOR 3.3.2

CMOR 3.3.1

CMOR 3.3.1

CMOR 3.3.0

Accelerate PrePARE from 2s to 0.1 (IPSL request). Fix PrePARE/CMOR memory issue. Call Cdunif.so library directly instead of cdms2. Rremove fixed double array to dynamic double due to number of objects increasing. *Update license REGEX to allow "/" at the end of URL (GFDL request). * Update "Conventions" REGEX to allow "CMIP-6.0" up to "CMIP-6.2". Update grid tables. Remove standard_name to vertices_latitudes and vertices_longitudes for CF-1 compliance.

CMOR version 3.2.0

update example documentation