Citation: Hu et al. (2026) bioRxiv https://pmc.ncbi.nlm.nih.gov/articles/PMC12190912/
To contribute, please open an issue on this Github repository.
- R
- S4 class data object: Bioconductor SingleCellExperiment
- Feature selection: NS-Forest
install.packages("devtools")
devtools::install_github("NLM-DIR/FRmatch")To start with a tutorial.
Earlier versions are managed in Releases.
Version 2.0:
Zhang et al. (2022) Cell type matching in single-cell RNA-sequencing data using FR-Match. Scientific Reports. https://doi.org/10.1038/s41598-022-14192-z
Version 1.0:
Zhang et al. (2020) FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman–Rafsky non-parametric test. Briefings in Bioinformatics. https://doi.org/10.1093/bib/bbaa339
- Beverly Peng (bpeng@jcvi.org)
- Brian Aevermann (baevermann@chanzuckerberg.com)
- Richard Scheuermann (richard.scheuermann@nih.gov)
- Yun (Renee) Zhang (yun.zhang@nih.gov)
- Division of Intramural Research, National Library of Medicine
Our collaborators:
- Allen Institute of Brain Science
- Brain Initiative Cell Census Network
- Chan Zuckerberg Initiative
- California Institute for Regenerative Medicine
- J. Craig Venter Institute