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rammap in-process backend hard-codes the map-ont preset, silently ignoring --mm2_short_reads/--mm2_pacbio

Status: Open.

#1092 In FelixKrueger/Bismark;

· FelixKrueger opened on Aug 1, 2026

minimap2/rammap: positive AS through the end-to-end MAPQ denominator compresses MAPQ to the top rung

Status: Open.

#1081 In FelixKrueger/Bismark;

· FelixKrueger opened on Jul 29, 2026

Bismark (Perl) is in maintenance freeze — new work targets the Rust suite

Status: Open.

#1010 In FelixKrueger/Bismark;

· FelixKrueger opened on Jun 22, 2026