SOFTX-D-25-00913/.pre-commit-config.yaml at main · ElsevierSoftwareX/SOFTX-D-25-00913 · GitHub

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exclude: ^(tests/|scripts/|examples/)
repos:
    # Python dependencies
    - repo: https://github.com/astral-sh/uv-pre-commit
      # uv version.
      rev: 0.9.21
      hooks:
        - id: uv-lock

    # Python code formatting with autopep8
    - repo: https://github.com/hhatto/autopep8
      rev: v2.3.2
      hooks:
        - id: autopep8

    # Import sorting with isort
    - repo: https://github.com/PyCQA/isort
      rev: 7.0.0
      hooks:
        - id: isort

    # Python linting with flake8
    - repo: https://github.com/PyCQA/flake8
      rev: 7.3.0
      hooks:
        - id: flake8

    # Type checking with mypy
    - repo: https://github.com/pre-commit/mirrors-mypy
      rev: v1.19.1
      hooks:
        - id: mypy
          additional_dependencies: [
            types-tqdm,
            types-PyYAML,
            types-setuptools,
            types-requests,
          ]

    # Google-style docstring checking
    - repo: https://github.com/PyCQA/pydocstyle
      rev: 6.3.0
      hooks:
        - id: pydocstyle
          additional_dependencies: [tomli]

    # Security scanning with bandit
    - repo: https://github.com/PyCQA/bandit
      rev: 1.9.2
      hooks:
        - id: bandit
          args: ["-c", "pyproject.toml"]
          additional_dependencies: ["bandit[toml]", "pbr"]

    # YAML/JSON/TOML formatting and validation
    - repo: https://github.com/pre-commit/pre-commit-hooks
      rev: v6.0.0
      hooks:
        - id: check-yaml
          args: ["--unsafe"]  # Allow custom YAML tags
        - id: check-json
        - id: check-toml
        - id: end-of-file-fixer
        - id: trailing-whitespace
        - id: check-merge-conflict
        - id: check-case-conflict
        - id: check-added-large-files
          args: ["--maxkb=1000"]
        - id: check-docstring-first
        - id: debug-statements
        - id: name-tests-test
          args: ["--pytest-test-first"]

    # Check for Python import cycles and unused imports (auto-fixes)
    - repo: https://github.com/PyCQA/autoflake
      rev: v2.3.1
      hooks:
        - id: autoflake
          args:
            - --remove-all-unused-imports
            - --remove-unused-variables
            - --in-place
            - --recursive

    # Conventional commit message validation
    - repo: https://github.com/compilerla/conventional-pre-commit
      rev: v4.3.0
      hooks:
        - id: conventional-pre-commit
          stages: [commit-msg]

    # Check for proper snake_case/PascalCase naming conventions
    - repo: https://github.com/pre-commit/pygrep-hooks
      rev: v1.10.0
      hooks:
        - id: python-no-log-warn
        - id: python-no-eval
        - id: python-use-type-annotations
        - id: python-check-blanket-noqa
        - id: python-check-blanket-type-ignore

    # # Custom hooks for project-specific requirements
    # - repo: local
    #   hooks:
    #     # Check single return statement pattern
    #     - id: check-single-return
    #       name: Check single return statements
    #       entry: python scripts/custom.py
    #       language: python
    #       files: \.py$
    #       exclude: ^(tests/|__pycache__/|\.venv/)
    #       additional_dependencies: []

    # Spell checking for documentation
    - repo: https://github.com/crate-ci/typos
      rev: v1
      hooks:
        - id: typos
          args: ["--format", "brief"]
          exclude: ^(\.git/|\.venv/|build/|dist/)