PHF Science - New Zealand Institute for Public Health and Forensic Science
- 40 followers
- New Zealand
- http://www.phfscience.nz
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human_genomics_pipeline
human_genomics_pipeline PublicA Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
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covid_in_wastewater
covid_in_wastewater PublicQuantitative data about how much SARS-CoV2 virus is found in New Zealand's wastewater
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nz-sars-cov2-variants
nz-sars-cov2-variants PublicData on prevalence of variants of concern in Aotearoa New Zealand
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vcf_annotation_pipeline
vcf_annotation_pipeline PublicA Snakemake workflow to filter, annotate and prepare variant call format (VCF) data for scout using GATK4, SnpSift, VEP and genmod. Designed to be used after human_genomics_pipeline.
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Repositories
- covid_in_wastewater Public
Quantitative data about how much SARS-CoV2 virus is found in New Zealand's wastewater
ESR-NZ/covid_in_wastewater’s past year of commit activity - nz-seawater_intrusion_risk_to_2150 Public
Random forest model of groundwater table elevation (to 10 km from the nearest coast) relative to sea level under projections of sea level rise and vertical land movement to 2150
ESR-NZ/nz-seawater_intrusion_risk_to_2150’s past year of commit activity - Notifiable-Diseases-Annual-Dashboard- Public
This repository is to make Annual Notifiable Disease Dashboard data public.
ESR-NZ/Notifiable-Diseases-Annual-Dashboard-’s past year of commit activity - viralrecon Public Forked from nf-core/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
ESR-NZ/viralrecon’s past year of commit activity - human_genomics_pipeline Public
A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
ESR-NZ/human_genomics_pipeline’s past year of commit activity
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