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Possible to add additional flags to STAR run to include WASP?

Status: Open.

#105 In ENCODE-DCC/rna-seq-pipeline;

· s-hoyt opened on Jan 27, 2026

cannot use --singularity

Status: Open.

#104 In ENCODE-DCC/rna-seq-pipeline;

· AlsoATraveler opened on Nov 1, 2024

There's two files of "transcript quantifications" without any reasonable way to tell them apart in the metadata file ?

Status: Open.

#103 In ENCODE-DCC/rna-seq-pipeline;

· PanosFirmpas opened on Nov 13, 2023

workflow help

Status: Open.

#102 In ENCODE-DCC/rna-seq-pipeline;

· songxh1996 opened on Jun 1, 2023

question on strandedness option

Status: Open.

#101 In ENCODE-DCC/rna-seq-pipeline;

· adalgarno opened on Jan 5, 2023

error when using croo to generate report

Status: Open.

#96 In ENCODE-DCC/rna-seq-pipeline;

· yr-gh opened on Jul 4, 2022

SAM header has duplicate sorting order (SO) fields

Status: Open.

#95 In ENCODE-DCC/rna-seq-pipeline;

· zaeleus opened on Apr 20, 2022

shell /bin/sh does not exist in container when running with singularity

Status: Open.

#89 In ENCODE-DCC/rna-seq-pipeline;

· westonkjones opened on Oct 11, 2021