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Backport b4edc00 (#7927, PR #8022)#8031

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Backport b4edc00 (#7927, PR #8022)#8031
dsotirho-ucsc wants to merge 4 commits into
developfrom
backports/b4edc00

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@dsotirho-ucsc
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@dsotirho-ucsc dsotirho-ucsc commented May 15, 2026

Checklist

Author

  • PR is assigned to the author
  • Status of PR is In progress
  • Target branch is develop
  • Name of PR branch matches backports/<7-digit SHA1 of most recent backported commit>
  • Status of linked issue is Stable
  • PR title contains the 7-digit SHA1 of the backported commits
  • PR title references the issues relating to the backported commits
  • PR title references the PRs that introduced the backported commits

Author (before every review)

  • PR branch is up to date (if not, merge develop into PR branch to integrate upstream changes)
  • Ran make requirements_update or this PR does not modify Dockerfile, environment, requirements*.txt, common.mk, Makefile or environment.boot
  • Added R tag to commit title or this PR does not modify requirements*.txt
  • This PR is labeled reqs or does not modify requirements*.txt
  • PR is not a draft
  • PR is awaiting requested review from system administrator
  • Status of PR is Review requested
  • PR is assigned to only the system administrator and the author

System administrator (after approval)

  • Actually approved the PR
  • Decided if PR can be labeled no sandbox
  • PR title is appropriate as title of merge commit
  • N reviews label is accurate
  • Status of PR is Approved
  • PR is assigned to only the operator and the author

Operator

  • Sanity-checked history
  • Pushed PR branch to GitHub

Operator (sandbox build)

  • Added sandbox label or PR is labeled no sandbox
  • Pushed PR branch to GitLab dev or PR is labeled no sandbox
  • Pushed PR branch to GitLab anvildev or PR is labeled no sandbox
  • Build passes in sandbox deployment or PR is labeled no sandbox
  • Build passes in anvilbox deployment or PR is labeled no sandbox
  • Reviewed build logs for anomalies in sandbox deployment or PR is labeled no sandbox
  • Reviewed build logs for anomalies in anvilbox deployment or PR is labeled no sandbox
  • Deleted unreferenced indices in sandbox or this PR does not remove catalogs or otherwise causes unreferenced indices in sandbox
  • Deleted unreferenced indices in anvilbox or this PR does not remove catalogs or otherwise causes unreferenced indices in anvilbox
  • Started reindex in sandbox or this PR is not labeled reindex:dev
  • Started reindex in anvilbox or this PR is not labeled reindex:anvildev
  • Checked for failures in sandbox or this PR is not labeled reindex:dev
  • Checked for failures in anvilbox or this PR is not labeled reindex:anvildev
  • Started mirroring in sandbox or this PR is not labeled mirror:dev
  • Started mirroring in anvilbox or this PR is not labeled mirror:anvildev
  • Checked for failures in sandbox or this PR is not labeled mirror:dev
  • Checked for failures in anvilbox or this PR is not labeled mirror:anvildev

Operator (merge the branch)

  • All status checks passed and the PR is mergeable
  • The title of the merge commit starts with the title of this PR
  • Added PR # reference (to this PR) to merge commit title
  • Collected commit title tags in merge commit title but excluded any p tags
  • Pushed merge commit to GitHub
  • Status of PR is Merged lower

Operator (main build)

  • Pushed merge commit to GitLab dev
  • Pushed merge commit to GitLab anvildev
  • Build passes on GitLab dev
  • Reviewed build logs for anomalies on GitLab dev
  • Build passes on GitLab anvildev
  • Reviewed build logs for anomalies on GitLab anvildev
  • Deleted PR branch from GitHub
  • PR is assigned to only the operator
  • Deleted PR branch from GitLab dev
  • Deleted PR branch from GitLab anvildev
  • Status of linked issue is Stable

Operator

  • PR is assigned to no one

Shorthand for review comments

  • L line is too long
  • W line wrapping is wrong
  • Q bad quotes
  • F other formatting problem

@dsotirho-ucsc dsotirho-ucsc self-assigned this May 15, 2026
@coveralls
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coveralls commented May 15, 2026

Coverage Status

coverage: 85.098%. remained the same — backports/b4edc00 into develop

@codecov
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codecov Bot commented May 15, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 85.01%. Comparing base (26a8a1c) to head (d1c533e).

Additional details and impacted files
@@           Coverage Diff            @@
##           develop    #8031   +/-   ##
========================================
  Coverage    85.01%   85.01%           
========================================
  Files          165      165           
  Lines        23678    23678           
========================================
  Hits         20131    20131           
  Misses        3547     3547           

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4 participants