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Remove 'Edit on CCBR/ASPEN' edit link from docs site Autoassign milestone #36: Issue #136 opened by kopardev
19s
19s
chore: post-release cleanup for v1.2.0 Autoassign milestone #35: Pull request #135 opened by github-actions Bot
18s release/v1.2.0
release/v1.2.0
18s
fix(report): restore tidyverse import and exclude normalized count files Autoassign milestone #33: Pull request #133 opened by kopardev
15s release/1.2.0
release/1.2.0
15s
chore: 🤖 sync copilot instructions - 2026-08-27 Autoassign milestone #32: Pull request #132 opened by ccbr-bot Bot
20s update-copilot-instructions
update-copilot-instructions
20s
chore: 🤖 sync copilot instructions - 2026-08-26 Autoassign milestone #31: Pull request #131 opened by ccbr-bot Bot
20s update-copilot-instructions
update-copilot-instructions
20s
chore: use air for R formatting Autoassign milestone #30: Pull request #130 opened by kelly-sovacool
15s pre-commit-fix
pre-commit-fix
15s
docs for interpreting motif enrichment analysis results Autoassign milestone #29: Issue #129 opened by kelly-sovacool
19s
19s
bug: diffatac skipped for all genomes except hg38 and mm10 due to hard-coded genome guard Autoassign milestone #28: Issue #128 opened by kopardev
19s
19s
Increase walltime for below steps Autoassign milestone #27: Issue #114 assigned by kopardev
20s
20s
feat: implement attempt-based resource scaling (RAM/walltime doubling on retry) Autoassign milestone #26: Issue #127 assigned by kopardev
18s
18s
feat: implement attempt-based resource scaling (RAM/walltime doubling on retry) Autoassign milestone #25: Issue #127 opened by kopardev
17s
17s
diffatac fails for hs1_chrR: object 'roiAnnodf' not found in DESeq2.Rmd Autoassign milestone #24: Issue #125 assigned by kopardev
15m 5s
15m 5s
diffatac fails for hs1_chrR: object 'roiAnnodf' not found in DESeq2.Rmd Autoassign milestone #23: Issue #125 opened by kopardev
15m 3s
15m 3s
Fix create_tn5bams failure from negative BED coordinates in Tn5 conversion Autoassign milestone #22: Issue #124 opened by kopardev
19s
19s
fix: add hs1/hs1_chrR TxDb support to R annotation scripts (ccbr_annotate_bed.R, ccbr_annotate_peaks.R) Autoassign milestone #21: Issue #123 assigned by kopardev
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20s
fix: add hs1/hs1_chrR TxDb support to R annotation scripts (ccbr_annotate_bed.R, ccbr_annotate_peaks.R) Autoassign milestone #20: Issue #123 opened by kopardev
21s
21s
fix: ZeroDivisionError in _ccbr_counts2density.py when flanking TSS bins have zero reads Autoassign milestone #19: Issue #122 opened by kopardev
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fix: ZeroDivisionError in _ccbr_counts2density.py when flanking TSS bins have zero reads Autoassign milestone #18: Issue #122 assigned by kopardev
23s
23s
chore: 🤖 sync copilot instructions - 2026-08-04 Autoassign milestone #17: Pull request #121 opened by ccbr-bot Bot
23s update-copilot-instructions
update-copilot-instructions
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feat: add hs1_chrR (T2T-CHM13 + rDNA unit) as a supported genome Autoassign milestone #16: Pull request #120 opened by kopardev
21s issue_117
issue_117
21s
feat(aspen): port CARLISLE structured logging, state markers, and jobby integration Autoassign milestone #15: Pull request #119 opened by kopardev
21s issue_118
issue_118
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feat: port CARLISLE logging and aesthetic improvements to aspen CLI script Autoassign milestone #14: Issue #118 opened by kopardev
29s
29s
feat: add hs1_chrR as a supported reference genome Autoassign milestone #13: Issue #117 assigned by kopardev
19s
19s
feat: add hs1_chrR as a supported reference genome Autoassign milestone #12: Issue #117 opened by kopardev
21s
21s
chore: 🤖 sync copilot instructions - 2026-07-03 Autoassign milestone #11: Pull request #116 opened by ccbr-bot Bot
18s update-copilot-instructions
update-copilot-instructions
18s