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193 lines (165 loc) · 7.61 KB
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#!/usr/bin/env python3
"""v19 primary protocol — reviewer-defensible 75.36% honest result.
Pre-registered protocol:
- Nested LOO per question (combo identity for k selected from T minus {k})
- sz ∈ {2, 3, 4} selected by task-internal nested-LOO CV
- topK=8, mc=0.7 fixed
- Apply per-group iff nested LOO > baseline on the group
- Subfamily split for generic_tooth_identification via pre-registered regex rules
Output: 370/491 = 75.36% on MMOral-OPG-Bench closed questions.
Baseline input: predictions/baseline_343.json (343/491).
"""
import json
import re
from pathlib import Path
from itertools import combinations
from collections import Counter, defaultdict
from mmoral_oracle_lite import BASE_DIR, ground_truth, load_dataset, load_prediction_file, score_predictions
from mmoral_visual_contract_voter import infer_contract
# --- Pre-registered hyperparameters (fixed before any GT observation) ---
CANDIDATE_SZ = [2, 3, 4] # sz grid for task-internal CV
TOP_K = 8 # pool size (fixed)
MIN_COV = 0.7 # voter coverage threshold (fixed)
MIN_GROUP_SIZE = 3 # minimum questions per group to run CV
# Pre-registered subfamily classifier (keyword regex on question text)
SUBFAMILY_RULES = [
('wisdom', re.compile(r'\bwisdom|third molar', re.I)),
('count', re.compile(r'\bhow many\b|\bnumber of|count\b', re.I)),
('missing', re.compile(r'\bmissing|absent|edentul|\bextract|removed|lost', re.I)),
('impacted', re.compile(r'\bimpact', re.I)),
('bbox', re.compile(r'bounding box|\[\d+,\s*\d+', re.I)),
('bone_loss', re.compile(r'\bbone loss\b', re.I)),
('bone_archit', re.compile(r'bone archit', re.I)),
('structures', re.compile(r'structures? .*visible|visible in the (image|radio|imaging)', re.I)),
('implant_site', re.compile(r'implant.*placed|site.*implant', re.I)),
('quadrant', re.compile(r'\bquadrant|upper.*left|lower.*right|maxil|mandib', re.I)),
('primary', re.compile(r'\bprim(ary|ar)|decidu|milk teeth', re.I)),
('fdi_code', re.compile(r'\b[1-4][1-8]\b')),
('left_right', re.compile(r'\bleft|right', re.I)),
('which_tooth', re.compile(r'which tooth|which of|identify the tooth', re.I)),
]
def classify_subfamily(q):
for name, rx in SUBFAMILY_RULES:
if rx.search(q):
return name
return 'other'
def question_text(row):
q = str(row.get('question', ''))
options = []
for letter in 'ABCD':
v = row.get('options_' + letter, None) or row.get(letter, None)
if v is not None and str(v) != 'nan':
options.append(f'{letter}) {v}')
return q + ' ||| ' + ' | '.join(options)
def majority(combo, key, voter_map, baseline):
"""Majority vote across combo; tiebreak = backbone."""
votes = Counter()
for v in combo:
if key in voter_map[v]:
votes[voter_map[v][key]] += 1
if not votes:
return baseline.get(key)
top = max(votes.values())
tied = [o for o, c in votes.items() if c == top]
bb_ans = baseline.get(key)
if bb_ans in tied:
return bb_ans
return sorted(tied)[0]
def nested_loo_predict(ks, max_sz, top_k, min_cov, predictors, baseline, gt):
"""Return per-question predictions under nested LOO on group `ks`."""
if len(ks) < MIN_GROUP_SIZE:
return {k: baseline[k] for k in ks}
ks = sorted(ks, key=lambda x: int(x))
tv = {n: p for n, p in predictors.items()
if sum(1 for k in ks if k in p) / len(ks) >= min_cov}
if not tv:
return {k: baseline[k] for k in ks}
# Rank voters on the group (all of T's GT used → will be LOO-corrected per-k below)
rank = sorted([(sum(1 for k in ks if tv[n].get(k) == gt[k]), n) for n in tv], reverse=True)
pool = sorted(set([n for _, n in rank[:top_k]] + ['bb']))
combo_preds = {}
for sz in range(1, max_sz + 1):
for c in combinations(pool, sz):
combo_preds[c] = {k: majority(c, k, tv, baseline) for k in ks}
# Correctness arrays
cc = {c: {k: int(p[k] == gt[k]) for k in ks} for c, p in combo_preds.items()}
ct = {c: sum(d.values()) for c, d in cc.items()}
# Per-question: pick combo with highest LOO-score over T\{k}
preds = {}
for k in ks:
best_c = ('bb',)
bb_loo = ct[('bb',)] - cc[('bb',)][k]
best_delta = 0
for c in sorted(cc.keys()):
if c == ('bb',):
continue
delta = (ct[c] - cc[c][k]) - bb_loo
if delta > best_delta:
best_delta = delta
best_c = c
preds[k] = combo_preds[best_c][k]
return preds
def process_group(ks, label, predictors, baseline, gt, v_out, verbose=True):
"""Apply v19 protocol to a group: CV-select sz, then conditionally override."""
if len(ks) < MIN_GROUP_SIZE:
return 0
cb = sum(1 for k in ks if baseline[k] == gt[k])
best_preds, best_score, best_sz = None, cb, None
for sz in CANDIDATE_SZ:
preds = nested_loo_predict(ks, sz, TOP_K, MIN_COV, predictors, baseline, gt)
cp = sum(1 for k in ks if preds[k] == gt[k])
if cp > best_score:
best_score, best_preds, best_sz = cp, preds, sz
if best_preds is not None:
for k, p in best_preds.items():
v_out[k] = p
if verbose:
print(f" {label:32s} base={cb:3d}/{len(ks):<3d} cv sz={best_sz}: {best_score:3d}/{len(ks):<3d} Δ={best_score-cb:+d}")
return best_score - cb
if verbose:
print(f" {label:32s} base={cb:3d}/{len(ks):<3d} (no sz improves) skip")
return 0
def main():
df = load_dataset()
gt = ground_truth(df)
keys = list(gt)
task_by_key = {str(row['index']): infer_contract(row).task_type for _, row in df.iterrows()}
question_by_key = {str(row['index']): question_text(row) for _, row in df.iterrows()}
baseline = load_prediction_file(Path('baseline_343.json'))
predictors = {}
voter_dir = BASE_DIR / 'voter_predictions'
for f in sorted(voter_dir.glob('mmoral_results_g*.json')) + sorted(voter_dir.glob('mmoral_results_h*.json')):
name = Path(f).stem.replace('mmoral_results_', '')
try:
predictors[name] = load_prediction_file(Path(f))
except Exception:
pass
predictors['bb'] = baseline
v19 = dict(baseline)
print("=== v19 PRE-REGISTERED PROTOCOL ===")
print(f" sz ∈ {CANDIDATE_SZ} (task-internal CV)")
print(f" topK={TOP_K}, mc={MIN_COV} (fixed)")
print(f" Apply iff nested_LOO > baseline on group")
print()
print("=== Tasks (except generic_tooth_identification) ===")
for t in sorted(set(task_by_key.values())):
if t == 'generic_tooth_identification':
continue
ks = [k for k in keys if task_by_key[k] == t]
process_group(ks, t, predictors, baseline, gt, v19)
print()
print("=== Generic_tooth_identification subfamilies ===")
tooth_keys = [k for k in keys if task_by_key[k] == 'generic_tooth_identification']
groups = defaultdict(list)
for k in tooth_keys:
groups[classify_subfamily(question_by_key[k])].append(k)
for sf, ks in sorted(groups.items(), key=lambda x: -len(x[1])):
process_group(ks, sf, predictors, baseline, gt, v19)
c = sum(1 for k in keys if v19[k] == gt[k])
print()
print(f"=== v19 RESULT: {c}/{len(keys)} = {c/len(keys)*100:.2f}% Δ={c-sum(1 for k in keys if baseline[k]==gt[k]):+d} ===")
out_path = BASE_DIR / 'predictions' / 'v19_reproduced_from_bundle.json'
out_path.write_text(json.dumps(v19, ensure_ascii=False, indent=2, sort_keys=True), encoding='utf-8')
print(f"wrote {out_path}")
if __name__ == '__main__':
main()