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docs/20250902_171121_log.json

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docs/_build/html/_sources/data_input.rst.txt

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**File Readers**
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Ioniq supports multiple file formats commonly utilized in nanopore experiments:
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Ionique supports multiple file formats commonly utilized in nanopore experiments:
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- **.edh** – Element Data Header files containing metadata and pointers to raw data
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- **.opt** – Orbit Potential files with recorded current and voltage data

docs/_build/html/_sources/index.rst.txt

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.. ioniq documentation master file, created by
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.. ionique documentation master file, created by
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sphinx-quickstart on Tue Feb 11 10:00:50 2025.
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You can adapt this file completely to your liking, but it should at least
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contain the root `toctree` directive.
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Ioniq: A Nanopore Signal Analysis Framework
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Ionique: A Nanopore Signal Analysis Framework
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==========================================
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**Authors:**
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Overview
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--------
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Ioniq is a Python module for processing and analyzing nanopore signal data. It provides tools for reading, filtering, segmenting, and analyzing nanopore experimental data. The framework supports structured workflows for signal processing and quality control, allowing researchers to extract relevant information from raw current and voltage traces.
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Ionique is a Python module for processing and analyzing nanopore signal data. It provides tools for reading, filtering, segmenting, and analyzing nanopore experimental data. The framework supports structured workflows for signal processing and quality control, allowing researchers to extract relevant information from raw current and voltage traces.
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Features
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--------
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Installation (Development)
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--------------------------
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To install the development version of Ioniq, clone the repository and install it in editable mode:
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To install the development version of Ionique, clone the repository and install it in editable mode:
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.. code-block:: bash
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git clone https://github.com/wanunulab/ioniq.git
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cd ioniq
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pip install ioniq
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git clone https://github.com/wanunulab/ionique.git
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cd ionique
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pip install ionique
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**Requirements:**
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- Python > 3.10

docs/_build/html/_sources/installation.rst.txt

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Install
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=======
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Install ioniq
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Install ionique
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============
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The most recent release of the ``ioniq`` package can be installed using pip_
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The most recent release of the ``ionique`` package can be installed using pip_
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.. code-block:: console
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$ pip install ioniq
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$ pip install ionique
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If you are very new to coding, more detailed instructions, we provide guides on VSCode, Python3 and ioniq installment.
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If you are very new to coding, more detailed instructions, we provide guides on VSCode, Python3 and ionique installment.
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Installation from Source
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========================
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If you want to contribute to ioniq you can build ioniq from source using the
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If you want to contribute to ionique you can build ionique from source using the
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instructions below.
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.. code-block:: console
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$ git clone https://github.com/wanunulab/ioniq.git
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$ cd ioniq
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$ git clone https://github.com/wanunulab/ionique.git
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$ cd ionique
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$ pip install -e .
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docs/_build/html/_sources/modules.rst.txt

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Ioniq
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Ionique
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=====
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`Click here for an introduction to nanopore sequencing and signal analysis <https://en.wikipedia.org/wiki/Nanopore_sequencing>`_

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