debug: add debug print statement

dlaehnemann · dlaehnemann · commit 8e472d8391ab · 2025-11-13T20:37:46.000+01:00
diff --git a/workflow/scripts/join_fusion_partner.py b/workflow/scripts/join_fusion_partner.py
@@ -87,6 +87,8 @@ def join_short_obs(df, samples):
 )
 paired_fusions = paired_fusions.filter(regex="^(?!mateid|id)")
 
+print(snakemake.input["varlociraptor"])
+print(snakemake.input["arriba"])
 # From this file, we bring back useful arriba annotations for the final
 # datavzrd table for the report.
 annotated_candidates = pd.read_csv(

Original file line number	Diff line number	Diff line change
`@@ -87,6 +87,8 @@ def join_short_obs(df, samples):`
`87`	`87`	`)`
`88`	`88`	`paired_fusions = paired_fusions.filter(regex="^(?!mateid\|id)")`
`89`	`89`
	`90`	`+print(snakemake.input["varlociraptor"])`
	`91`	`+print(snakemake.input["arriba"])`
`90`	`92`	`# From this file, we bring back useful arriba annotations for the final`
`91`	`93`	`# datavzrd table for the report.`
`92`	`94`	`annotated_candidates = pd.read_csv(`