perf: autobump conda envs

Author: johanneskoester

workflow/envs/arriba.linux-64.pin.txt

@@ -2,4 +2,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - arriba =2.5
+  - arriba =2.5.1

workflow/envs/arriba.yaml

@@ -0,0 +1,19 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+# created-by: conda 24.9.2
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-he0feb66_18.conda#239c5e9546c38a1e884d69effcf4c882
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda#a9f577daf3de00bca7c3c76c0ecbd1de
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-he0feb66_18.conda#0aa00f03f9e39fb9876085dee11a85d4
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.2.0-h69a702a_18.conda#d5e96b1ed75ca01906b3d2469b4ce493
+https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.18-h3b78370_2.conda#915f5995e94f60e9a4826e0b0920ee88
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-15.2.0-h934c35e_18.conda#1b08cd684f34175e4514474793d44bcb
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
+https://conda.anaconda.org/conda-forge/linux-64/libasprintf-0.25.1-h3f43e3d_1.conda#3b0d184bc9404516d418d4509e418bdc
+https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-0.25.1-h3f43e3d_1.conda#2f4de899028319b27eb7a4023be5dfd2
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-15.2.0-hdf11a46_18.conda#6235adb93d064ecdf3d44faee6f468de
+https://conda.anaconda.org/conda-forge/linux-64/readline-8.3-h853b02a_0.conda#d7d95fc8287ea7bf33e0e7116d2b95ec
+https://conda.anaconda.org/conda-forge/linux-64/gmp-6.3.0-hac33072_2.conda#c94a5994ef49749880a8139cf9afcbe1
+https://conda.anaconda.org/conda-forge/linux-64/mpfr-4.2.2-he0a73b1_0.conda#85ce2ffa51ab21da5efa4a9edc5946aa
+https://conda.anaconda.org/conda-forge/linux-64/gawk-5.3.1-hcd3d067_0.conda#91d4414ab699180b2b0b10b8112c5a2f

workflow/envs/awk.linux-64.pin.txt

@@ -1,4 +1,4 @@
 channels:
   - conda-forge
 dependencies:
-  - gawk =5.1
+  - gawk =5.3.1

workflow/envs/awk.yaml

@@ -0,0 +1,37 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+# created-by: conda 24.9.2
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2026.2.25-hbd8a1cb_0.conda#4492fd26db29495f0ba23f146cd5638d
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-he0feb66_18.conda#239c5e9546c38a1e884d69effcf4c882
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.2-h25fd6f3_2.conda#d87ff7921124eccd67248aa483c23fec
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda#a9f577daf3de00bca7c3c76c0ecbd1de
+https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb78ec9c_6.conda#4a13eeac0b5c8e5b8ab496e6c4ddd829
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-he0feb66_18.conda#0aa00f03f9e39fb9876085dee11a85d4
+https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_9.conda#d2ffd7602c02f2b316fd921d39876885
+https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.6-hb03c661_0.conda#920bb03579f15389b9e512095ad995b7
+https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.3-hb9d3cd8_0.conda#b38117a3c920364aff79f870c984b4a3
+https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.25-h17f619e_0.conda#6c77a605a7a689d17d4819c0f8ac9a00
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.2.0-h69a702a_18.conda#d5e96b1ed75ca01906b3d2469b4ce493
+https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.18-h3b78370_2.conda#915f5995e94f60e9a4826e0b0920ee88
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.2-hb03c661_0.conda#c7c83eecbb72d88b940c249af56c8b17
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-15.2.0-h934c35e_18.conda#1b08cd684f34175e4514474793d44bcb
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.6.1-h35e630c_1.conda#f61eb8cd60ff9057122a3d338b99c00f
+https://conda.anaconda.org/bioconda/linux-64/bedtools-2.31.1-h13024bc_3.tar.bz2#99c4e90e82db906439e00beafb343d16
+https://conda.anaconda.org/conda-forge/linux-64/libasprintf-0.25.1-h3f43e3d_1.conda#3b0d184bc9404516d418d4509e418bdc
+https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20250104-pl5321h7949ede_0.conda#c277e0a4d549b03ac1e9d6cbbe3d017b
+https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172bf1cd1ff8629f2b1179945ed45055
+https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-0.25.1-h3f43e3d_1.conda#2f4de899028319b27eb7a4023be5dfd2
+https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.1-hcf80075_0.conda#eecce068c7e4eddeb169591baac20ac4
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-15.2.0-hdf11a46_18.conda#6235adb93d064ecdf3d44faee6f468de
+https://conda.anaconda.org/conda-forge/linux-64/readline-8.3-h853b02a_0.conda#d7d95fc8287ea7bf33e0e7116d2b95ec
+https://conda.anaconda.org/conda-forge/linux-64/gmp-6.3.0-hac33072_2.conda#c94a5994ef49749880a8139cf9afcbe1
+https://conda.anaconda.org/conda-forge/linux-64/krb5-1.22.2-ha1258a1_0.conda#fb53fb07ce46a575c5d004bbc96032c2
+https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.68.1-h877daf1_0.conda#2a45e7f8af083626f009645a6481f12d
+https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.19.0-hcf29cc6_0.conda#d50608c443a30c341c24277d28290f76
+https://conda.anaconda.org/conda-forge/linux-64/mpfr-4.2.2-he0a73b1_0.conda#85ce2ffa51ab21da5efa4a9edc5946aa
+https://conda.anaconda.org/conda-forge/linux-64/gawk-5.3.1-hcd3d067_0.conda#91d4414ab699180b2b0b10b8112c5a2f
+https://conda.anaconda.org/bioconda/linux-64/htslib-1.23.1-h633afcb_0.conda#209caa9e4ff0b9ed02dd09c3161917e5
+https://conda.anaconda.org/bioconda/linux-64/samtools-1.23.1-ha83d96e_0.conda#89624fbd17c069abcbc8b19b96d497a0

workflow/envs/awk_bedtools.linux-64.pin.txt

@@ -2,6 +2,6 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bedtools =2.30
-  - gawk =5.1
-  - samtools =1.15
+  - bedtools =2.31.1
+  - gawk =5.3.1
+  - samtools =1.23.1

workflow/envs/awk_bedtools.yaml

@@ -0,0 +1,36 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+# created-by: conda 24.9.2
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2026.2.25-hbd8a1cb_0.conda#4492fd26db29495f0ba23f146cd5638d
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-he0feb66_18.conda#239c5e9546c38a1e884d69effcf4c882
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.2-h25fd6f3_2.conda#d87ff7921124eccd67248aa483c23fec
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda#a9f577daf3de00bca7c3c76c0ecbd1de
+https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb78ec9c_6.conda#4a13eeac0b5c8e5b8ab496e6c4ddd829
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-he0feb66_18.conda#0aa00f03f9e39fb9876085dee11a85d4
+https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_9.conda#d2ffd7602c02f2b316fd921d39876885
+https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.6-hb03c661_0.conda#920bb03579f15389b9e512095ad995b7
+https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.3-hb9d3cd8_0.conda#b38117a3c920364aff79f870c984b4a3
+https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.25-h17f619e_0.conda#6c77a605a7a689d17d4819c0f8ac9a00
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.2.0-h69a702a_18.conda#d5e96b1ed75ca01906b3d2469b4ce493
+https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-15.2.0-h68bc16d_18.conda#646855f357199a12f02a87382d429b75
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.2-hb03c661_0.conda#c7c83eecbb72d88b940c249af56c8b17
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-15.2.0-h934c35e_18.conda#1b08cd684f34175e4514474793d44bcb
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.6.1-h35e630c_1.conda#f61eb8cd60ff9057122a3d338b99c00f
+https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20250104-pl5321h7949ede_0.conda#c277e0a4d549b03ac1e9d6cbbe3d017b
+https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172bf1cd1ff8629f2b1179945ed45055
+https://conda.anaconda.org/conda-forge/linux-64/libgfortran-15.2.0-h69a702a_18.conda#9063115da5bc35fdc3e1002e69b9ef6e
+https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.1-hcf80075_0.conda#eecce068c7e4eddeb169591baac20ac4
+https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc
+https://conda.anaconda.org/conda-forge/linux-64/krb5-1.22.2-ha1258a1_0.conda#fb53fb07ce46a575c5d004bbc96032c2
+https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.68.1-h877daf1_0.conda#2a45e7f8af083626f009645a6481f12d
+https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.32-pthreads_h94d23a6_0.conda#89d61bc91d3f39fda0ca10fcd3c68594
+https://conda.anaconda.org/conda-forge/linux-64/perl-5.32.1-7_hd590300_perl5.conda#f2cfec9406850991f4e3d960cc9e3321
+https://conda.anaconda.org/conda-forge/linux-64/libblas-3.11.0-6_h4a7cf45_openblas.conda#6d6d225559bfa6e2f3c90ee9c03d4e2e
+https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.19.0-hcf29cc6_0.conda#d50608c443a30c341c24277d28290f76
+https://conda.anaconda.org/bioconda/linux-64/htslib-1.23.1-h633afcb_0.conda#209caa9e4ff0b9ed02dd09c3161917e5
+https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.11.0-6_h0358290_openblas.conda#36ae340a916635b97ac8a0655ace2a35
+https://conda.anaconda.org/conda-forge/linux-64/gsl-2.7-he838d99_0.tar.bz2#fec079ba39c9cca093bf4c00001825de
+https://conda.anaconda.org/bioconda/linux-64/bcftools-1.23.1-hb2cee57_0.conda#7fa25d1694f3a94ebb2c71dfc265f792

workflow/envs/bcftools.linux-64.pin.txt

@@ -2,4 +2,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bcftools =1.19
+  - bcftools =1.23.1

workflow/envs/bcftools.yaml

@@ -0,0 +1,29 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+# created-by: conda 24.9.2
+@EXPLICIT
+https://conda.anaconda.org/conda-forge/noarch/ca-certificates-2026.2.25-hbd8a1cb_0.conda#4492fd26db29495f0ba23f146cd5638d
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-15.2.0-he0feb66_18.conda#239c5e9546c38a1e884d69effcf4c882
+https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.2-h25fd6f3_2.conda#d87ff7921124eccd67248aa483c23fec
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-20_gnu.conda#a9f577daf3de00bca7c3c76c0ecbd1de
+https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.7-hb78ec9c_6.conda#4a13eeac0b5c8e5b8ab496e6c4ddd829
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-15.2.0-he0feb66_18.conda#0aa00f03f9e39fb9876085dee11a85d4
+https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hda65f42_9.conda#d2ffd7602c02f2b316fd921d39876885
+https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.6-hb03c661_0.conda#920bb03579f15389b9e512095ad995b7
+https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.3-hb9d3cd8_0.conda#b38117a3c920364aff79f870c984b4a3
+https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.25-h17f619e_0.conda#6c77a605a7a689d17d4819c0f8ac9a00
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-15.2.0-h69a702a_18.conda#d5e96b1ed75ca01906b3d2469b4ce493
+https://conda.anaconda.org/conda-forge/linux-64/liblzma-5.8.2-hb03c661_0.conda#c7c83eecbb72d88b940c249af56c8b17
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-15.2.0-h934c35e_18.conda#1b08cd684f34175e4514474793d44bcb
+https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h2d0b736_3.conda#47e340acb35de30501a76c7c799c41d7
+https://conda.anaconda.org/conda-forge/linux-64/openssl-3.6.1-h35e630c_1.conda#f61eb8cd60ff9057122a3d338b99c00f
+https://conda.anaconda.org/bioconda/linux-64/bedtools-2.31.1-h13024bc_3.tar.bz2#99c4e90e82db906439e00beafb343d16
+https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20250104-pl5321h7949ede_0.conda#c277e0a4d549b03ac1e9d6cbbe3d017b
+https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172bf1cd1ff8629f2b1179945ed45055
+https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.1-hcf80075_0.conda#eecce068c7e4eddeb169591baac20ac4
+https://conda.anaconda.org/conda-forge/linux-64/krb5-1.22.2-ha1258a1_0.conda#fb53fb07ce46a575c5d004bbc96032c2
+https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.68.1-h877daf1_0.conda#2a45e7f8af083626f009645a6481f12d
+https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.19.0-hcf29cc6_0.conda#d50608c443a30c341c24277d28290f76
+https://conda.anaconda.org/bioconda/linux-64/htslib-1.23.1-h633afcb_0.conda#209caa9e4ff0b9ed02dd09c3161917e5
+https://conda.anaconda.org/bioconda/linux-64/samtools-1.23.1-ha83d96e_0.conda#89624fbd17c069abcbc8b19b96d497a0

workflow/envs/bedtools.linux-64.pin.txt

@@ -2,5 +2,5 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bedtools =2.29
-  - samtools =1.12
+  - bedtools =2.31.1
+  - samtools =1.23.1