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feat: split output files into subdirectories #2133

feat: split output files into subdirectories

feat: split output files into subdirectories #2133

Triggered via pull request November 3, 2025 07:51
Status Failure
Total duration 11m 57s
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main.yml

on: pull_request
Matrix: Testing
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11 errors and 16 warnings
test sra download
Process completed with exit code 1.
test target regions, multiple BEDs
The strategy configuration was canceled because "Testing.sra_download_--configfile" failed
test target regions, multiple BEDs
The operation was canceled.
test no candidate filtering
The strategy configuration was canceled because "Testing.sra_download_--configfile" failed
test no candidate filtering
The operation was canceled.
test local input
The strategy configuration was canceled because "Testing.sra_download_--configfile" failed
test local input
The operation was canceled.
test target regions
The strategy configuration was canceled because "Testing.sra_download_--configfile" failed
test target regions
The operation was canceled.
test primers
The strategy configuration was canceled because "Testing.sra_download_--configfile" failed
test primers
The operation was canceled.
test local input (dryrun)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
test local input (dryrun)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
test testcase generation
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
test testcase generation
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
test sra download
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
test sra download
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
test target regions, multiple BEDs
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
test target regions, multiple BEDs
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
test no candidate filtering
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
test no candidate filtering
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
test local input
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
test target regions
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
test local input
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
test target regions
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
test primers
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
test primers
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.