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:\GitClones\ProteaseGuru\Engine\Engine.csproj
E:\GitClones\ProteaseGuru\Engine\GlobalVariables.cs
E:\GitClones\ProteaseGuru\Engine\MyRecursiveEventArgs.cs
E:\GitClones\ProteaseGuru\Engine\ProteaseGuruException.cs
E:\GitClones\ProteaseGuru\Engine\SingleFileEventArgs.cs
E:\GitClones\ProteaseGuru\Engine\StringEventArgs.cs
E:\GitClones\ProteaseGuru\Engine\Data\elements.dat
E:\GitClones\ProteaseGuru\Engine\Data\PSI-MOD.obo.xml
E:\GitClones\ProteaseGuru\Engine\Data\ptmlist.txt
E:\GitClones\ProteaseGuru\Engine\Data\unimod.xml
E:\GitClones\ProteaseGuru\Engine\Mods\aListOfmods.txt
E:\GitClones\ProteaseGuru\Engine\Mods\glyco.txt
E:\GitClones\ProteaseGuru\Engine\Mods\Mods.txt
E:\GitClones\ProteaseGuru\Engine\Mods\ProteaseMods.txt
E:\GitClones\ProteaseGuru\Engine\Mods\substitutions.txt
E:\GitClones\ProteaseGuru\Engine\Mods\surfactants.txt
E:\GitClones\ProteaseGuru\Engine\Mods\tmt.txt
E:\GitClones\ProteaseGuru\Engine\ProteolyticDigestion\proteases.tsv
E:\GitClones\ProteaseGuru\ProteaseGuruGui\AllResultsWindow.xaml
E:\GitClones\ProteaseGuru\ProteaseGuruGui\AllResultsWindow.xaml.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\App.xaml
E:\GitClones\ProteaseGuru\ProteaseGuruGui\App.xaml.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\AssemblyInfo.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\CustomProteaseWindow.xaml
E:\GitClones\ProteaseGuru\ProteaseGuruGui\CustomProteaseWindow.xaml.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\ForTreeView.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\ProteaseGuruGui.csproj
E:\GitClones\ProteaseGuru\ProteaseGuruGui\ProteaseGuruGui.csproj.DotSettings
E:\GitClones\ProteaseGuru\ProteaseGuruGui\HistogramWindow.xaml
E:\GitClones\ProteaseGuru\ProteaseGuruGui\HistogramWindow.xaml.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\IndividualProteinAnalyzerWindow.xaml
E:\GitClones\ProteaseGuru\ProteaseGuruGui\IndividualProteinAnalyzerWindow.xaml.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\InRunTask.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\MainWindow.xaml
E:\GitClones\ProteaseGuru\ProteaseGuruGui\MainWindow.xaml.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\MotifTextBoxControl.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\ParametersForDataGrid.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\PlotModelStat.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\PreRunTask.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\proteaseGuru.ico
E:\GitClones\ProteaseGuru\ProteaseGuruGui\ProteaseModificationWindow.xaml
E:\GitClones\ProteaseGuru\ProteaseGuruGui\ProteaseModificationWindow.xaml.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\ProteaseSummaryForTreeView.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\ProteinDbForDataGrid.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\ProteinDigestionSummaryRow.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\ProteinForTreeView.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\ProteinResultsWindow.xaml
E:\GitClones\ProteaseGuru\ProteaseGuruGui\ProteinResultsWindow.xaml.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\ProteinSummaryForTreeView.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\ResultsForDataGrid.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\RunSummaryForTreeView.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\SearchModifications.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\SequenceCoverageMap.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\Twitter_Logo_Blue.bmp
E:\GitClones\ProteaseGuru\ProteaseGuruGui\youtube_20.bmp
E:\GitClones\ProteaseGuru\ProteaseGuruGui\DigestionParamSetup\DigestionConditions.xaml
E:\GitClones\ProteaseGuru\ProteaseGuruGui\DigestionParamSetup\DigestionConditions.xaml.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\DigestionParamSetup\ProteaseSpecificDigestionControl.xaml
E:\GitClones\ProteaseGuru\ProteaseGuruGui\DigestionParamSetup\ProteaseSpecificDigestionControl.xaml.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\Icons\Blogger_20.bmp
E:\GitClones\ProteaseGuru\ProteaseGuruGui\Icons\MMnice.bmp
E:\GitClones\ProteaseGuru\ProteaseGuruGui\Icons\proteaseGuru.ico
E:\GitClones\ProteaseGuru\ProteaseGuruGui\Icons\proteaseGuru.png
E:\GitClones\ProteaseGuru\ProteaseGuruGui\Icons\Twitter_Logo_Blue.bmp
E:\GitClones\ProteaseGuru\ProteaseGuruGui\Icons\youtube_20.bmp
E:\GitClones\ProteaseGuru\ProteaseGuruGui\Util\DoubleTexBoxControl.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\Util\IntegerTextBoxControl.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGui\Util\SelectedProteaseToBackgroundConverter.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGuiFunctions\BaseViewModel.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGuiFunctions\DigestionConditionsSetupViewModel.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGuiFunctions\GuiFunctions.csproj
E:\GitClones\ProteaseGuru\ProteaseGuruGuiFunctions\ProteaseSpecificParametersViewModel.cs
E:\GitClones\ProteaseGuru\ProteaseGuruGuiFunctions\RelayCommand.cs
E:\GitClones\ProteaseGuru\Tasks\DbForDigestion.cs
E:\GitClones\ProteaseGuru\Tasks\DigestionTask.cs
E:\GitClones\ProteaseGuru\Tasks\EverythingRunnerEngine.cs
E:\GitClones\ProteaseGuru\Tasks\GlobalSettings.cs
E:\GitClones\ProteaseGuru\Tasks\InSilicoPep.cs
E:\GitClones\ProteaseGuru\Tasks\MyRecursiveEventArgs.cs
E:\GitClones\ProteaseGuru\Tasks\MyTaskResults.cs
E:\GitClones\ProteaseGuru\Tasks\Parameters.cs
E:\GitClones\ProteaseGuru\Tasks\PeptideResultAnalysisTask.cs
E:\GitClones\ProteaseGuru\Tasks\ProteaseGuruTask.cs
E:\GitClones\ProteaseGuru\Tasks\SeekMaximumCoverage.cs
E:\GitClones\ProteaseGuru\Tasks\SingleTaskEventArgs.cs
E:\GitClones\ProteaseGuru\Tasks\Tasks.csproj
E:\GitClones\ProteaseGuru\Tasks\XmlForTaskListEventArgs.cs
E:\GitClones\ProteaseGuru\Tasks\CoverageMapConfiguration\CoverageMapDataPreparer.cs
E:\GitClones\ProteaseGuru\Tasks\CoverageMapConfiguration\ProteinCoverageAnalysis.cs
E:\GitClones\ProteaseGuru\Tasks\CoverageMapConfiguration\ProteinCoverageAnalyzer.cs
E:\GitClones\ProteaseGuru\Tasks\CoverageMapConfiguration\ProteinCoverageResult.cs
E:\GitClones\ProteaseGuru\Test\ChronologerTests.cs
E:\GitClones\ProteaseGuru\Test\DigestionTests.cs
E:\GitClones\ProteaseGuru\Test\MaxCoverageTests.cs
E:\GitClones\ProteaseGuru\Test\ProteinCoverageAnalysisTests.cs
E:\GitClones\ProteaseGuru\Test\Test.csproj
E:\GitClones\ProteaseGuru\Test\TestSetup.cs
E:\GitClones\ProteaseGuru\Test\Databases\ProteaseModTest.fasta
E:\GitClones\ProteaseGuru\Test\Databases\TestDatabase_1.fasta
E:\GitClones\ProteaseGuru\Test\Databases\TestDatabase_2.fasta
E:\GitClones\ProteaseGuru\Test\Databases\TestDatabase_3.fasta
PS E:\GitClones\ProteaseGuru>