From 1d064d3acbf0fbfa34f97a2c49ed4a0add211629 Mon Sep 17 00:00:00 2001
From: Daniel Cameron <daniel.l.cameron@gmail.com>
Date: Tue, 9 Sep 2025 21:05:07 +1000
Subject: [PATCH 1/2] Fixed <INV> example POS and REF (#836)

---
 VCFv4.1.tex | 2 +-
 VCFv4.2.tex | 2 +-
 VCFv4.3.tex | 2 +-
 VCFv4.4.tex | 2 +-
 VCFv4.5.tex | 2 +-
 5 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/VCFv4.1.tex b/VCFv4.1.tex
index d1dc3246..420cee83 100644
--- a/VCFv4.1.tex
+++ b/VCFv4.1.tex
@@ -731,7 +731,7 @@ \subsubsection{Inversions}
 \small
 \begin{tabular}{ l l l l l l l l }
 \#CHROM & POS & ID & REF & ALT & QUAL & FILTER & INFO \\
-2 & 321682 & INV0 & T & $<$INV$>$ & 6 & PASS & SVTYPE=INV;END=421681 \\
+2 & 321681 & INV0 & G & $<$INV$>$ & 6 & PASS & SVTYPE=INV;END=421681 \\
 \end{tabular}
 \normalsize
 \vspace{0.3cm}
diff --git a/VCFv4.2.tex b/VCFv4.2.tex
index ee4544f8..70e595cd 100644
--- a/VCFv4.2.tex
+++ b/VCFv4.2.tex
@@ -748,7 +748,7 @@ \subsubsection{Inversions}
 \small
 \begin{tabular}{ l l l l l l l l }
 \#CHROM & POS & ID & REF & ALT & QUAL & FILTER & INFO \\
-2 & 321682 & INV0 & T & $<$INV$>$ & 6 & PASS & SVTYPE=INV;END=421681 \\
+2 & 321681 & INV0 & G & $<$INV$>$ & 6 & PASS & SVTYPE=INV;END=421681 \\
 \end{tabular}
 \normalsize
 \vspace{0.3cm}
diff --git a/VCFv4.3.tex b/VCFv4.3.tex
index 008bcfc0..01671b89 100644
--- a/VCFv4.3.tex
+++ b/VCFv4.3.tex
@@ -1158,7 +1158,7 @@ \subsubsection{Inversions}
 \small
 \begin{tabular}{ l l l l l l l l }
 \#CHROM & POS & ID & REF & ALT & QUAL & FILTER & INFO \\
-2 & 321682 & INV0 & T & $<$INV$>$ & 6 & PASS & SVTYPE=INV;END=421681 \\
+2 & 321681 & INV0 & G & $<$INV$>$ & 6 & PASS & SVTYPE=INV;END=421681 \\
 \end{tabular}
 \normalsize
 \vspace{0.3cm}
diff --git a/VCFv4.4.tex b/VCFv4.4.tex
index c76c66ff..07875a0b 100644
--- a/VCFv4.4.tex
+++ b/VCFv4.4.tex
@@ -1467,7 +1467,7 @@ \subsubsection{Inversions}
 \small
 \begin{tabular}{ l l l l l l l l }
 \#CHROM & POS & ID & REF & ALT & QUAL & FILTER & INFO \\
-2 & 321681 & INV0 & T & $<$INV$>$ & 6 & PASS & END=421681 \\
+2 & 321681 & INV0 & G & $<$INV$>$ & 6 & PASS & SVTYPE=INV;END=421681 \\
 \end{tabular}
 \normalsize
 \vspace{0.3cm}
diff --git a/VCFv4.5.tex b/VCFv4.5.tex
index bcd66c08..2372ad7b 100644
--- a/VCFv4.5.tex
+++ b/VCFv4.5.tex
@@ -1627,7 +1627,7 @@ \subsubsection{Inversions}
 \small
 \begin{tabular}{ l l l l l l l l }
 \#CHROM & POS & ID & REF & ALT & QUAL & FILTER & INFO \\
-2 & 321681 & INV0 & T & $<$INV$>$ & 6 & PASS & SVLEN=100000 \\
+2 & 321681 & INV0 & G & $<$INV$>$ & 6 & PASS & SVLEN=100000 \\
 \end{tabular}
 \normalsize
 \vspace{0.3cm}

From 353c77b999c8de88c963e3bc39e406621b201629 Mon Sep 17 00:00:00 2001
From: Daniel Cameron <daniel.l.cameron@gmail.com>
Date: Tue, 9 Sep 2025 21:12:40 +1000
Subject: [PATCH 2/2] Adjusting to make minimal change to the example

---
 VCFv4.4.tex | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/VCFv4.4.tex b/VCFv4.4.tex
index 07875a0b..31cb6628 100644
--- a/VCFv4.4.tex
+++ b/VCFv4.4.tex
@@ -1467,7 +1467,7 @@ \subsubsection{Inversions}
 \small
 \begin{tabular}{ l l l l l l l l }
 \#CHROM & POS & ID & REF & ALT & QUAL & FILTER & INFO \\
-2 & 321681 & INV0 & G & $<$INV$>$ & 6 & PASS & SVTYPE=INV;END=421681 \\
+2 & 321681 & INV0 & G & $<$INV$>$ & 6 & PASS & END=421681 \\
 \end{tabular}
 \normalsize
 \vspace{0.3cm}