I'm trying to run the example provided for run_viper() in the documentation for this package but am getting the following error when using the code directly:
library(bcellViper)
data(bcellViper, package = "bcellViper")
acessing (human) dorothea regulons
for mouse regulons: data(dorothea_mm, package = "dorothea")
data(dorothea_hs, package = "dorothea")
run viper
tf_activities <- run_viper(dset, dorothea_hs,
-
options = list(method = "scale", minsize = 4,
-
eset.filter = FALSE, cores = 1,
-
Error in .check_expected_columns():
! Output columns are different than expected.
Expected: source, target, mor, likelihood
Extra:
Removed: source
Run rlang::last_trace() to see where the error occurred.
Thought welcome.
I'm trying to run the example provided for run_viper() in the documentation for this package but am getting the following error when using the code directly:
Error in
.check_expected_columns():! Output columns are different than expected.
Expected: source, target, mor, likelihood
Extra:
Removed: source
Run
rlang::last_trace()to see where the error occurred.Thought welcome.