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fix: repo-local DB by default, security pin, and misc bug fixes #88

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Run time

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Job	Run time
Python 3.11 tests	1m 13s
Python 3.12 tests	1m 7s
Web UI lint + type check	36s
Python 3.13 tests	1m 6s
Lint + Type Check	11s
Integration tests	0s
	4m 13s